Analysis of interatomic Contacts of Structural Units in PDB entry:
9KFF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KFF entry

There is 1 chain in PDB entry 9KFF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 82ASP 855
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9KFF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
82 120Right-handed alpha
Helix 2
AA2
A
160 185Right-handed alpha
Helix 3
AA3
A
199 209Right-handed alpha
Helix 4
AA4
A
231 234Right-handed 310
Helix 5
AA5
A
245 247Right-handed 310
Helix 6
AA6
A
249 257Right-handed alpha
Helix 7
AA7
A
261 265Right-handed 310
Helix 8
AA8
A
269 271Right-handed 310
Helix 9
AA9
A
272 277Right-handed alpha
Helix 10
AB1
A
296 300Right-handed 310
Helix 11
AB2
A
320 331Right-handed alpha
Helix 12
AB3
A
332 334Right-handed 310
Helix 13
AB4
A
348 359Right-handed alpha
Helix 14
AB5
A
371 375Right-handed 310
Helix 15
AB6
A
377 393Right-handed alpha
Helix 16
AB7
A
393 399Right-handed alpha
Helix 17
AB8
A
399 403Right-handed alpha
Helix 18
AB9
A
442 459Right-handed alpha
Helix 19
AC1
A
459 486Right-handed alpha
Helix 20
AC2
A
827 850Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9KFF.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 268first strand
Strand 2
A
238 243anti-parallel
Strand 3
A
283 290anti-parallel
Strand 4
A
224 229parallel
Strand 5
A
309 313anti-parallel
Strand 6
A
188 194parallel
Strand 7
A
336 342parallel
Strand 8
A
366 370parallel
Strand 9
A
404 406parallel
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