Analysis of interatomic Contacts of Structural Units in PDB entry:
9KFJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KFJ entry

There are 5 chains in PDB entry 9KFJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ALA 78	LEU 404
G	SER 8	ARG 62
I	THR 4	PHE 355
S	VAL 2	LEU 247
T	GLU 3	ASN 340

There are 30 helices in PDB entry 9KFJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	79	109	Right-handed alpha
Helix 2	AA2	C	111	114	Right-handed 310
Helix 3	AA3	C	115	134	Right-handed alpha
Helix 4	AA4	C	134	144	Right-handed alpha
Helix 5	AA5	C	152	186	Right-handed alpha
Helix 6	AA6	C	214	235	Right-handed alpha
Helix 7	AA7	C	269	276	Right-handed alpha
Helix 8	AA8	C	276	299	Right-handed alpha
Helix 9	AA9	C	317	355	Right-handed alpha
Helix 10	AB1	C	362	380	Right-handed alpha
Helix 11	AB2	C	380	391	Right-handed alpha
Helix 12	AB3	C	393	404	Right-handed alpha
Helix 13	AB4	G	9	24	Right-handed alpha
Helix 14	AB5	G	29	42	Right-handed alpha
Helix 15	AB6	G	43	48	Right-handed 310
Helix 16	AB7	G	55	59	Right-handed 310
Helix 17	AB8	I	6	32	Right-handed alpha
Helix 18	AB9	I	45	54	Right-handed alpha
Helix 19	AC1	I	208	217	Right-handed 310
Helix 20	AC2	I	242	256	Right-handed alpha
Helix 21	AC3	I	257	261	Right-handed 310
Helix 22	AC4	I	271	280	Right-handed alpha
Helix 23	AC5	I	283	287	Right-handed 310
Helix 24	AC6	I	296	310	Right-handed alpha
Helix 25	AC7	I	331	353	Right-handed alpha
Helix 26	AC8	S	28	32	Right-handed 310
Helix 27	AC9	S	74	76	Right-handed 310
Helix 28	AD1	S	87	91	Right-handed 310
Helix 29	AD2	T	5	26	Right-handed alpha
Helix 30	AD3	T	29	34	Right-handed alpha

There are 14 sheets in PDB entry 9KFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	240	first strand
Strand 2	C	245	246	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	186	192	first strand
Strand 2	I	195	201	anti-parallel
Strand 3	I	34	40	parallel
Strand 4	I	221	227	parallel
Strand 5	I	264	270	parallel
Strand 6	I	320	323	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	4	7	first strand
Strand 2	S	17	24	anti-parallel
Strand 3	S	78	84	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	11	12	first strand
Strand 2	S	118	119	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	59	60	first strand
Strand 2	S	45	51	anti-parallel
Strand 3	S	33	39	anti-parallel
Strand 4	S	93	99	anti-parallel
Strand 5	S	115	116	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	146	148	first strand
Strand 2	S	243	246	parallel
Strand 3	S	225	231	anti-parallel
Strand 4	S	174	179	anti-parallel
Strand 5	S	186	189	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	155	160	first strand
Strand 2	S	211	216	anti-parallel
Strand 3	S	203	207	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	47	51	first strand
Strand 2	T	336	339	anti-parallel
Strand 3	T	327	331	anti-parallel
Strand 4	T	315	320	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	58	63	first strand
Strand 2	T	69	74	anti-parallel
Strand 3	T	78	83	anti-parallel
Strand 4	T	88	94	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	100	105	first strand
Strand 2	T	111	116	anti-parallel
Strand 3	T	121	125	anti-parallel
Strand 4	T	134	139	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	146	151	first strand
Strand 2	T	156	161	anti-parallel
Strand 3	T	165	170	anti-parallel
Strand 4	T	175	181	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	187	192	first strand
Strand 2	T	198	203	anti-parallel
Strand 3	T	208	212	anti-parallel
Strand 4	T	218	222	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	229	234	first strand
Strand 2	T	240	245	anti-parallel
Strand 3	T	250	254	anti-parallel
Strand 4	T	259	264	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	273	277	first strand
Strand 2	T	284	289	anti-parallel
Strand 3	T	294	298	anti-parallel
Strand 4	T	304	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KFJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KFJ