Analysis of interatomic Contacts of Structural Units in PDB entry:
9KFX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KFX entry

There are 4 chains in PDB entry 9KFX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1TRP 610
B
 ASN -1TRP 610
R
 U -15 G 2
r
 U -15 G 2
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 9KFX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 15Right-handed alpha
Helix 2
AA2
A
16 30Right-handed alpha
Helix 3
AA3
A
38 50Right-handed alpha
Helix 4
AA4
A
51 66Right-handed alpha
Helix 5
AA5
A
70 84Right-handed alpha
Helix 6
AA6
A
86 97Right-handed alpha
Helix 7
AA7
A
101 115Right-handed alpha
Helix 8
AA8
A
117 131Right-handed alpha
Helix 9
AA9
A
136 151Right-handed alpha
Helix 10
AB1
A
152 167Right-handed alpha
Helix 11
AB2
A
171 185Right-handed alpha
Helix 12
AB3
A
187 197Right-handed alpha
Helix 13
AB4
A
202 216Right-handed alpha
Helix 14
AB5
A
218 232Right-handed alpha
Helix 15
AB6
A
239 252Right-handed alpha
Helix 16
AB7
A
253 267Right-handed alpha
Helix 17
AB8
A
268 271Right-handed 310
Helix 18
AB9
A
272 286Right-handed alpha
Helix 19
AC1
A
288 299Right-handed alpha
Helix 20
AC2
A
303 317Right-handed alpha
Helix 21
AC3
A
319 333Right-handed alpha
Helix 22
AC4
A
338 353Right-handed alpha
Helix 23
AC5
A
354 364Right-handed alpha
Helix 24
AC6
A
374 388Right-handed alpha
Helix 25
AC7
A
390 400Right-handed alpha
Helix 26
AC8
A
406 421Right-handed alpha
Helix 27
AC9
A
422 437Right-handed alpha
Helix 28
AD1
A
441 454Right-handed alpha
Helix 29
AD2
A
456 470Right-handed alpha
Helix 30
AD3
A
499 518Right-handed alpha
Helix 31
AD4
A
531 541Right-handed alpha
Helix 32
AD5
A
542 555Right-handed alpha
Helix 33
AD6
A
570 584Right-handed alpha
Helix 34
AD7
B
0 14Right-handed alpha
Helix 35
AD8
B
16 30Right-handed alpha
Helix 36
AD9
B
38 50Right-handed alpha
Helix 37
AE1
B
51 65Right-handed alpha
Helix 38
AE2
B
70 84Right-handed alpha
Helix 39
AE3
B
86 96Right-handed alpha
Helix 40
AE4
B
101 115Right-handed alpha
Helix 41
AE5
B
117 132Right-handed alpha
Helix 42
AE6
B
136 151Right-handed alpha
Helix 43
AE7
B
152 167Right-handed alpha
Helix 44
AE8
B
171 185Right-handed alpha
Helix 45
AE9
B
187 198Right-handed alpha
Helix 46
AF1
B
202 215Right-handed alpha
Helix 47
AF2
B
218 232Right-handed alpha
Helix 48
AF3
B
239 252Right-handed alpha
Helix 49
AF4
B
253 267Right-handed alpha
Helix 50
AF5
B
272 286Right-handed alpha
Helix 51
AF6
B
288 298Right-handed alpha
Helix 52
AF7
B
303 317Right-handed alpha
Helix 53
AF8
B
319 333Right-handed alpha
Helix 54
AF9
B
338 353Right-handed alpha
Helix 55
AG1
B
354 370Right-handed alpha
Helix 56
AG2
B
374 388Right-handed alpha
Helix 57
AG3
B
390 401Right-handed alpha
Helix 58
AG4
B
406 421Right-handed alpha
Helix 59
AG5
B
422 437Right-handed alpha
Helix 60
AG6
B
441 454Right-handed alpha
Helix 61
AG7
B
456 470Right-handed alpha
Helix 62
AG8
B
499 517Right-handed alpha
Helix 63
AG9
B
522 526Right-handed 310
Helix 64
AH1
B
531 541Right-handed alpha
Helix 65
AH2
B
542 555Right-handed alpha
Helix 66
AH3
B
570 585Right-handed alpha
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There are 2 sheets in PDB entry 9KFX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 491first strand
Strand 2
A
478 483anti-parallel
Strand 3
A
561 565anti-parallel
Strand 4
A
588 591parallel
Strand 5
A
596 600anti-parallel
Strand 6
A
603 604anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 491first strand
Strand 2
B
478 483anti-parallel
Strand 3
B
561 565anti-parallel
Strand 4
B
588 591parallel
Strand 5
B
596 600anti-parallel
Strand 6
B
603 604anti-parallel
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