Analysis of interatomic Contacts of Structural Units in PDB entry:
9KG3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KG3 entry

There are 7 chains in PDB entry 9KG3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	ASN 293
B	ALA 1	ASN 293
C	ALA 1	ASN 293
D	ALA 1	ASN 293
E	ALA 1	ASN 293
F	ALA 1	ASN 293
G	ALA 1	ASN 293

There are 12 helices in PDB entry 9KG3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	6	Right-handed 310
Helix 2	AA2	A	217	222	Right-handed alpha
Helix 3	AA3	B	1	6	Right-handed 310
Helix 4	AA4	B	217	223	Right-handed alpha
Helix 5	AA5	C	217	222	Right-handed alpha
Helix 6	AA6	D	1	6	Right-handed 310
Helix 7	AA7	D	217	223	Right-handed alpha
Helix 8	AA8	E	1	6	Right-handed 310
Helix 9	AA9	E	217	222	Right-handed alpha
Helix 10	AB1	F	205	209	Right-handed 310
Helix 11	AB2	F	217	223	Right-handed alpha
Helix 12	AB3	G	217	223	Right-handed alpha

There are 24 sheets in PDB entry 9KG3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	29	first strand
Strand 2	A	34	41	anti-parallel
Strand 3	A	54	56	anti-parallel
Strand 4	A	229	233	anti-parallel
Strand 5	A	97	101	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	223	224	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	69	first strand
Strand 2	A	75	89	anti-parallel
Strand 3	A	153	157	first strand
Strand 4	A	164	171	anti-parallel
Strand 5	A	243	248	anti-parallel
Strand 6	A	251	260	anti-parallel
Strand 7	A	265	270	anti-parallel
Strand 8	A	275	276	anti-parallel
Strand 9	A	280	285	anti-parallel
Strand 10	A	290	292	anti-parallel

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There are 21 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	113	first strand
Strand 2	A	116	121	first strand
Strand 3	A	124	127	first strand
Strand 4	A	133	149	anti-parallel
Strand 5	B	111	113	first strand
Strand 6	B	116	127	first strand
Strand 7	B	133	137	anti-parallel
Strand 8	B	140	151	anti-parallel
Strand 9	C	111	127	first strand
Strand 10	C	133	149	anti-parallel
Strand 11	D	111	127	first strand
Strand 12	D	132	149	anti-parallel
Strand 13	E	111	113	first strand
Strand 14	E	117	127	first strand
Strand 15	E	133	135	anti-parallel
Strand 16	E	138	141	anti-parallel
Strand 17	E	144	149	anti-parallel
Strand 18	F	111	127	first strand
Strand 19	F	133	149	anti-parallel
Strand 20	G	111	127	anti-parallel
Strand 21	G	133	149	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	22	first strand
Strand 2	B	40	43	anti-parallel
Strand 3	B	52	56	anti-parallel
Strand 4	B	229	233	anti-parallel
Strand 5	B	97	102	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	27	first strand
Strand 2	B	36	38	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	69	first strand
Strand 2	B	75	89	anti-parallel
Strand 3	B	153	157	first strand
Strand 4	B	164	171	anti-parallel
Strand 5	B	242	248	anti-parallel
Strand 6	B	250	260	anti-parallel
Strand 7	B	265	270	anti-parallel
Strand 8	B	276	277	anti-parallel
Strand 9	B	280	285	anti-parallel
Strand 10	B	290	291	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	176	first strand
Strand 2	B	179	183	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	27	first strand
Strand 2	C	36	42	anti-parallel
Strand 3	C	51	56	anti-parallel
Strand 4	C	229	234	anti-parallel
Strand 5	C	97	98	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	223	224	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	89	first strand
Strand 2	C	153	157	first strand
Strand 3	C	165	171	anti-parallel
Strand 4	C	242	248	anti-parallel
Strand 5	C	251	260	anti-parallel
Strand 6	C	265	276	anti-parallel
Strand 7	C	279	285	anti-parallel
Strand 8	C	290	291	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	22	first strand
Strand 2	D	25	29	first strand
Strand 3	D	34	43	anti-parallel
Strand 4	D	51	56	anti-parallel
Strand 5	D	97	101	first strand
Strand 6	D	229	234	anti-parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	71	first strand
Strand 2	D	75	89	anti-parallel
Strand 3	D	153	157	first strand
Strand 4	D	164	171	anti-parallel
Strand 5	D	242	248	anti-parallel
Strand 6	D	251	260	anti-parallel
Strand 7	D	265	270	anti-parallel
Strand 8	D	275	276	anti-parallel
Strand 9	D	279	285	anti-parallel
Strand 10	D	290	291	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	27	first strand
Strand 2	E	36	43	anti-parallel
Strand 3	E	52	56	anti-parallel
Strand 4	E	229	233	anti-parallel
Strand 5	E	97	102	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	76	first strand
Strand 2	E	258	260	anti-parallel
Strand 3	E	265	267	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	89	first strand
Strand 2	E	153	158	first strand
Strand 3	E	164	171	anti-parallel
Strand 4	E	242	248	anti-parallel
Strand 5	E	251	255	anti-parallel
Strand 6	E	275	276	anti-parallel
Strand 7	E	280	285	anti-parallel
Strand 8	E	290	292	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	175	first strand
Strand 2	E	181	182	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	22	first strand
Strand 2	F	40	43	anti-parallel
Strand 3	F	51	56	anti-parallel
Strand 4	F	229	234	anti-parallel
Strand 5	F	97	102	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	28	first strand
Strand 2	F	34	37	anti-parallel
Strand 3	F	59	61	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	158	first strand
Strand 2	F	164	171	anti-parallel
Strand 3	F	75	89	anti-parallel
Strand 4	F	243	260	anti-parallel
Strand 5	F	265	285	anti-parallel
Strand 6	F	290	292	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	174	175	first strand
Strand 2	F	181	182	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	22	first strand
Strand 2	G	25	27	first strand
Strand 3	G	36	43	anti-parallel
Strand 4	G	51	56	anti-parallel
Strand 5	G	97	100	first strand
Strand 6	G	229	234	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	70	71	first strand
Strand 2	G	75	89	anti-parallel
Strand 3	G	153	157	first strand
Strand 4	G	164	171	anti-parallel
Strand 5	G	248	260	anti-parallel
Strand 6	G	265	271	anti-parallel
Strand 7	G	276	279	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	242	245	first strand
Strand 2	G	282	285	anti-parallel
Strand 3	G	290	292	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KG3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KG3