Analysis of interatomic Contacts of Structural Units in PDB entry:
9KGI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KGI entry

There are 2 chains in PDB entry 9KGI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 209PRO 516
B
 PRO 209PRO 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 9KGI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
217 221Right-handed 310
Helix 2
AA2
A
390 396Right-handed alpha
Helix 3
AA3
A
448 455Right-handed alpha
Helix 4
AA4
B
217 221Right-handed 310
Helix 5
AA5
B
353 357Right-handed 310
Helix 6
AA6
B
390 396Right-handed alpha
Helix 7
AA7
B
448 454Right-handed alpha
Helix 8
AA8
B
455 457Right-handed 310
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There are 10 sheets in PDB entry 9KGI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
501 502anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
255 256anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
427 429first strand
Strand 2
A
337 348parallel
Strand 3
A
363 367anti-parallel
Strand 4
A
285 290anti-parallel
Strand 5
A
270 278anti-parallel
Strand 6
A
377 381anti-parallel
Strand 7
A
324 331parallel
Strand 8
A
337 348anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 386first strand
Strand 2
A
438 439anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 425first strand
Strand 2
A
441 443anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 429first strand
Strand 2
B
337 348parallel
Strand 3
B
323 331anti-parallel
Strand 4
B
377 386anti-parallel
Strand 5
B
438 439anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 429first strand
Strand 2
B
337 348parallel
Strand 3
B
363 367anti-parallel
Strand 4
B
285 290anti-parallel
Strand 5
B
270 278anti-parallel
Strand 6
B
377 386anti-parallel
Strand 7
B
438 439anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 490first strand
Strand 2
A
477 483anti-parallel
Strand 3
A
465 472anti-parallel
Strand 4
A
506 514anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
423 425first strand
Strand 2
B
441 443anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 490first strand
Strand 2
B
478 483anti-parallel
Strand 3
B
465 471anti-parallel
Strand 4
B
507 514anti-parallel
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