Analysis of interatomic Contacts of Structural Units in PDB entry:
9KGK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KGK entry

There are 3 chains in PDB entry 9KGK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 33THR 820
E
 VAL 21SER 549
B
 GLN 23SER 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9KGK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
170 175Right-handed alpha
Helix 2
AA2
A
242 247Right-handed 310
Helix 3
AA3
A
335 339Right-handed 310
Helix 4
AA4
A
466 471Right-handed alpha
Helix 5
AA5
A
472 474Right-handed 310
Helix 6
AA6
A
538 565Right-handed alpha
Helix 7
AA7
A
571 601Right-handed alpha
Helix 8
AA8
A
604 615Right-handed alpha
Helix 9
AA9
A
615 649Right-handed alpha
Helix 10
AB1
A
658 683Right-handed alpha
Helix 11
AB2
A
704 732Right-handed alpha
Helix 12
AB3
A
740 769Right-handed alpha
Helix 13
AB4
A
770 772Right-handed 310
Helix 14
AB5
A
778 790Right-handed alpha
Helix 15
AB6
A
791 805Right-handed alpha
Helix 16
AB7
A
805 820Right-handed alpha
Helix 17
AB8
E
511 515Right-handed 310
Helix 18
AB9
B
108 112Right-handed 310
Helix 19
AC1
B
130 134Right-handed 310
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There are 11 sheets in PDB entry 9KGK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
61 62parallel
Strand 3
A
85 87parallel
Strand 4
A
109 111parallel
Strand 5
A
133 135parallel
Strand 6
A
157 159parallel
Strand 7
A
181 183parallel
Strand 8
A
205 207parallel
Strand 9
A
229 231parallel
Strand 10
A
252 253parallel
Strand 11
A
276 277parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
95 96parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
215 216parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 302first strand
Strand 2
A
323 325parallel
Strand 3
A
347 349parallel
Strand 4
A
369 371parallel
Strand 5
A
393 395parallel
Strand 6
A
417 419parallel
Strand 7
A
438 440parallel
Strand 8
A
461 463parallel
Strand 9
A
521 522parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 380first strand
Strand 2
A
403 404parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
23 25first strand
Strand 2
E
443 449anti-parallel
Strand 3
E
502 507anti-parallel
Strand 4
E
493 497anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
482 484first strand
Strand 2
E
470 476anti-parallel
Strand 3
E
459 464anti-parallel
Strand 4
E
517 521anti-parallel
Strand 5
E
544 545anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
40 45anti-parallel
Strand 3
B
99 104anti-parallel
Strand 4
B
89 94anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
145 146parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 81first strand
Strand 2
B
67 73anti-parallel
Strand 3
B
56 61anti-parallel
Strand 4
B
113 119anti-parallel
Strand 5
B
136 137anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 81first strand
Strand 2
B
67 73anti-parallel
Strand 3
B
56 61anti-parallel
Strand 4
B
113 119anti-parallel
Strand 5
B
141 143anti-parallel
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