Analysis of interatomic Contacts of Structural Units in PDB entry:
9KGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KGM entry

There are 2 chains in PDB entry 9KGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 38LYS 433
B
 ALA 37LEU 435
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9KGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 71Right-handed alpha
Helix 2
AA2
A
79 83Right-handed 310
Helix 3
AA3
A
125 137Right-handed alpha
Helix 4
AA4
A
149 159Right-handed alpha
Helix 5
AA5
A
230 243Right-handed alpha
Helix 6
AA6
A
291 299Right-handed alpha
Helix 7
AA7
A
312 321Right-handed alpha
Helix 8
AA8
A
336 348Right-handed alpha
Helix 9
AA9
A
352 362Right-handed alpha
Helix 10
AB1
A
418 432Right-handed alpha
Helix 11
AB2
B
58 71Right-handed alpha
Helix 12
AB3
B
79 83Right-handed 310
Helix 13
AB4
B
125 137Right-handed alpha
Helix 14
AB5
B
149 159Right-handed alpha
Helix 15
AB6
B
230 243Right-handed alpha
Helix 16
AB7
B
289 299Right-handed alpha
Helix 17
AB8
B
312 325Right-handed alpha
Helix 18
AB9
B
336 347Right-handed alpha
Helix 19
AC1
B
352 363Right-handed alpha
Helix 20
AC2
B
419 434Right-handed alpha
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There are 5 sheets in PDB entry 9KGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 172first strand
Strand 2
A
175 181anti-parallel
Strand 3
A
187 192anti-parallel
Strand 4
A
139 146parallel
Strand 5
A
48 55anti-parallel
Strand 6
A
97 104parallel
Strand 7
A
87 94anti-parallel
Strand 8
A
74 78anti-parallel
Strand 9
A
206 207anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 247first strand
Strand 2
A
263 268anti-parallel
Strand 3
A
275 280anti-parallel
Strand 4
A
218 227parallel
Strand 5
A
302 310anti-parallel
Strand 6
A
389 397parallel
Strand 7
A
372 378anti-parallel
Strand 8
A
365 368anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 172first strand
Strand 2
B
175 180anti-parallel
Strand 3
B
187 192anti-parallel
Strand 4
B
139 146parallel
Strand 5
B
49 55anti-parallel
Strand 6
B
97 104parallel
Strand 7
B
87 94anti-parallel
Strand 8
B
74 78anti-parallel
Strand 9
B
206 207anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 268first strand
Strand 2
B
275 281anti-parallel
Strand 3
B
218 227parallel
Strand 4
B
302 310anti-parallel
Strand 5
B
389 396parallel
Strand 6
B
372 378anti-parallel
Strand 7
B
365 369anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
399 403first strand
Strand 2
B
406 409anti-parallel
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