Analysis of interatomic Contacts of Structural Units in PDB entry:
9KH7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KH7 entry

There are 6 chains in PDB entry 9KH7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 333
B	MET 1	VAL 333
C	MET 1	VAL 333
D	MET 1	VAL 333
E	MET 1	VAL 333
F	MET 1	VAL 333

There are 88 helices in PDB entry 9KH7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	33	Right-handed alpha
Helix 2	AA2	A	37	41	Right-handed 310
Helix 3	AA3	A	50	61	Right-handed alpha
Helix 4	AA4	A	63	74	Right-handed alpha
Helix 5	AA5	A	74	79	Right-handed alpha
Helix 6	AA6	A	94	105	Right-handed alpha
Helix 7	AA7	A	109	113	Right-handed 310
Helix 8	AA8	A	147	156	Right-handed alpha
Helix 9	AA9	A	174	178	Right-handed 310
Helix 10	AB1	A	181	193	Right-handed alpha
Helix 11	AB2	A	197	199	Right-handed 310
Helix 12	AB3	A	237	260	Right-handed alpha
Helix 13	AB4	A	289	308	Right-handed alpha
Helix 14	AB5	A	309	314	Right-handed alpha
Helix 15	AB6	B	16	33	Right-handed alpha
Helix 16	AB7	B	37	41	Right-handed 310
Helix 17	AB8	B	50	61	Right-handed alpha
Helix 18	AB9	B	63	74	Right-handed alpha
Helix 19	AC1	B	74	79	Right-handed alpha
Helix 20	AC2	B	94	105	Right-handed alpha
Helix 21	AC3	B	109	113	Right-handed 310
Helix 22	AC4	B	147	156	Right-handed alpha
Helix 23	AC5	B	174	178	Right-handed 310
Helix 24	AC6	B	181	193	Right-handed alpha
Helix 25	AC7	B	197	199	Right-handed 310
Helix 26	AC8	B	237	260	Right-handed alpha
Helix 27	AC9	B	289	308	Right-handed alpha
Helix 28	AD1	B	309	314	Right-handed alpha
Helix 29	AD2	C	12	14	Right-handed 310
Helix 30	AD3	C	15	33	Right-handed alpha
Helix 31	AD4	C	37	41	Right-handed 310
Helix 32	AD5	C	49	61	Right-handed alpha
Helix 33	AD6	C	63	74	Right-handed alpha
Helix 34	AD7	C	74	79	Right-handed alpha
Helix 35	AD8	C	94	105	Right-handed alpha
Helix 36	AD9	C	109	113	Right-handed 310
Helix 37	AE1	C	147	156	Right-handed alpha
Helix 38	AE2	C	174	178	Right-handed 310
Helix 39	AE3	C	181	193	Right-handed alpha
Helix 40	AE4	C	197	199	Right-handed 310
Helix 41	AE5	C	237	260	Right-handed alpha
Helix 42	AE6	C	289	308	Right-handed alpha
Helix 43	AE7	C	309	314	Right-handed alpha
Helix 44	AE8	D	12	14	Right-handed 310
Helix 45	AE9	D	15	33	Right-handed alpha
Helix 46	AF1	D	37	41	Right-handed 310
Helix 47	AF2	D	49	61	Right-handed alpha
Helix 48	AF3	D	63	74	Right-handed alpha
Helix 49	AF4	D	74	79	Right-handed alpha
Helix 50	AF5	D	94	105	Right-handed alpha
Helix 51	AF6	D	109	113	Right-handed 310
Helix 52	AF7	D	147	156	Right-handed alpha
Helix 53	AF8	D	174	178	Right-handed 310
Helix 54	AF9	D	181	193	Right-handed alpha
Helix 55	AG1	D	197	199	Right-handed 310
Helix 56	AG2	D	237	260	Right-handed alpha
Helix 57	AG3	D	289	308	Right-handed alpha
Helix 58	AG4	D	309	314	Right-handed alpha
Helix 59	AG5	E	12	14	Right-handed 310
Helix 60	AG6	E	15	33	Right-handed alpha
Helix 61	AG7	E	37	41	Right-handed 310
Helix 62	AG8	E	49	61	Right-handed alpha
Helix 63	AG9	E	63	74	Right-handed alpha
Helix 64	AH1	E	74	79	Right-handed alpha
Helix 65	AH2	E	94	105	Right-handed alpha
Helix 66	AH3	E	109	113	Right-handed 310
Helix 67	AH4	E	147	156	Right-handed alpha
Helix 68	AH5	E	174	178	Right-handed 310
Helix 69	AH6	E	181	193	Right-handed alpha
Helix 70	AH7	E	197	199	Right-handed 310
Helix 71	AH8	E	237	260	Right-handed alpha
Helix 72	AH9	E	289	308	Right-handed alpha
Helix 73	AI1	E	309	314	Right-handed alpha
Helix 74	AI2	F	12	14	Right-handed 310
Helix 75	AI3	F	15	33	Right-handed alpha
Helix 76	AI4	F	37	41	Right-handed 310
Helix 77	AI5	F	49	61	Right-handed alpha
Helix 78	AI6	F	63	74	Right-handed alpha
Helix 79	AI7	F	74	79	Right-handed alpha
Helix 80	AI8	F	94	105	Right-handed alpha
Helix 81	AI9	F	109	113	Right-handed 310
Helix 82	AJ1	F	147	156	Right-handed alpha
Helix 83	AJ2	F	174	178	Right-handed 310
Helix 84	AJ3	F	181	193	Right-handed alpha
Helix 85	AJ4	F	197	199	Right-handed 310
Helix 86	AJ5	F	237	260	Right-handed alpha
Helix 87	AJ6	F	289	308	Right-handed alpha
Helix 88	AJ7	F	309	314	Right-handed alpha

There are 12 sheets in PDB entry 9KH7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	133	first strand
Strand 2	A	117	123	anti-parallel
Strand 3	A	172	173	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	133	first strand
Strand 2	A	117	123	anti-parallel
Strand 3	A	44	49	parallel
Strand 4	A	4	11	parallel
Strand 5	A	201	205	parallel
Strand 6	A	267	269	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	133	first strand
Strand 2	B	117	123	anti-parallel
Strand 3	B	172	173	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	133	first strand
Strand 2	B	117	123	anti-parallel
Strand 3	B	44	49	parallel
Strand 4	B	4	11	parallel
Strand 5	B	201	205	parallel
Strand 6	B	267	269	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	133	first strand
Strand 2	C	117	123	anti-parallel
Strand 3	C	172	173	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	133	first strand
Strand 2	C	117	123	anti-parallel
Strand 3	C	44	47	parallel
Strand 4	C	4	9	parallel
Strand 5	C	201	205	parallel
Strand 6	C	267	269	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	133	first strand
Strand 2	D	117	123	anti-parallel
Strand 3	D	172	173	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	133	first strand
Strand 2	D	117	123	anti-parallel
Strand 3	D	44	47	parallel
Strand 4	D	4	9	parallel
Strand 5	D	201	205	parallel
Strand 6	D	267	269	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	133	first strand
Strand 2	E	117	123	anti-parallel
Strand 3	E	172	173	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	133	first strand
Strand 2	E	117	123	anti-parallel
Strand 3	E	44	47	parallel
Strand 4	E	4	9	parallel
Strand 5	E	201	205	parallel
Strand 6	E	267	269	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	133	first strand
Strand 2	F	117	123	anti-parallel
Strand 3	F	172	173	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	133	first strand
Strand 2	F	117	123	anti-parallel
Strand 3	F	44	47	parallel
Strand 4	F	4	9	parallel
Strand 5	F	201	205	parallel
Strand 6	F	267	269	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KH7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KH7