Analysis of interatomic Contacts of Structural Units in PDB entry:
9KHE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KHE entry

There are 4 chains in PDB entry 9KHE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 58GLY 313
B
 ILE 58GLY 313
C
 ILE 58GLY 313
D
 ILE 58GLY 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 9KHE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 88Right-handed alpha
Helix 2
AA2
A
94 96Right-handed 310
Helix 3
AA3
A
97 117Right-handed alpha
Helix 4
AA4
A
131 143Right-handed alpha
Helix 5
AA5
A
143 150Right-handed alpha
Helix 6
AA6
A
153 161Right-handed alpha
Helix 7
AA7
A
164 169Right-handed alpha
Helix 8
AA8
A
170 176Right-handed 310
Helix 9
AA9
A
177 191Right-handed alpha
Helix 10
AB1
A
195 226Right-handed alpha
Helix 11
AB2
A
248 252Right-handed 310
Helix 12
AB3
A
253 270Right-handed alpha
Helix 13
AB4
A
281 313Right-handed alpha
Helix 14
AB5
B
62 88Right-handed alpha
Helix 15
AB6
B
94 96Right-handed 310
Helix 16
AB7
B
97 117Right-handed alpha
Helix 17
AB8
B
131 143Right-handed alpha
Helix 18
AB9
B
143 150Right-handed alpha
Helix 19
AC1
B
153 161Right-handed alpha
Helix 20
AC2
B
164 169Right-handed alpha
Helix 21
AC3
B
170 176Right-handed 310
Helix 22
AC4
B
177 191Right-handed alpha
Helix 23
AC5
B
195 222Right-handed alpha
Helix 24
AC6
B
248 252Right-handed 310
Helix 25
AC7
B
253 270Right-handed alpha
Helix 26
AC8
B
281 313Right-handed alpha
Helix 27
AC9
C
62 88Right-handed alpha
Helix 28
AD1
C
94 96Right-handed 310
Helix 29
AD2
C
97 117Right-handed alpha
Helix 30
AD3
C
131 143Right-handed alpha
Helix 31
AD4
C
143 150Right-handed alpha
Helix 32
AD5
C
153 161Right-handed alpha
Helix 33
AD6
C
164 169Right-handed alpha
Helix 34
AD7
C
170 176Right-handed 310
Helix 35
AD8
C
177 191Right-handed alpha
Helix 36
AD9
C
195 226Right-handed alpha
Helix 37
AE1
C
248 252Right-handed 310
Helix 38
AE2
C
253 267Right-handed alpha
Helix 39
AE3
C
282 313Right-handed alpha
Helix 40
AE4
D
62 88Right-handed alpha
Helix 41
AE5
D
94 96Right-handed 310
Helix 42
AE6
D
97 117Right-handed alpha
Helix 43
AE7
D
131 142Right-handed alpha
Helix 44
AE8
D
144 150Right-handed alpha
Helix 45
AE9
D
153 161Right-handed alpha
Helix 46
AF1
D
164 169Right-handed alpha
Helix 47
AF2
D
170 176Right-handed 310
Helix 48
AF3
D
177 191Right-handed alpha
Helix 49
AF4
D
195 226Right-handed alpha
Helix 50
AF5
D
248 252Right-handed 310
Helix 51
AF6
D
253 270Right-handed alpha
Helix 52
AF7
D
281 313Right-handed alpha
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There are 4 sheets in PDB entry 9KHE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 241first strand
Strand 2
A
244 245anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 241first strand
Strand 2
B
244 245anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
240 241first strand
Strand 2
C
244 245anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
240 241first strand
Strand 2
D
244 245anti-parallel
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