Analysis of interatomic Contacts of Structural Units in PDB entry:
9KHF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KHF entry

There are 4 chains in PDB entry 9KHF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 58	TYR 724
B	ILE 58	ILE 723
C	ILE 58	TYR 724
D	ILE 58	ILE 723

There are132 helices in PDB entry 9KHF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	89	Right-handed alpha
Helix 2	AA2	A	97	116	Right-handed alpha
Helix 3	AA3	A	131	143	Right-handed alpha
Helix 4	AA4	A	144	150	Right-handed alpha
Helix 5	AA5	A	164	170	Right-handed alpha
Helix 6	AA6	A	171	176	Right-handed 310
Helix 7	AA7	A	177	191	Right-handed alpha
Helix 8	AA8	A	195	222	Right-handed alpha
Helix 9	AA9	A	248	252	Right-handed 310
Helix 10	AB1	A	253	270	Right-handed alpha
Helix 11	AB2	A	281	313	Right-handed alpha
Helix 12	AB3	A	314	334	Right-handed alpha
Helix 13	AB4	A	336	353	Right-handed alpha
Helix 14	AB5	A	356	363	Right-handed alpha
Helix 15	AB6	A	368	378	Right-handed alpha
Helix 16	AB7	A	379	381	Right-handed 310
Helix 17	AB8	A	391	400	Right-handed alpha
Helix 18	AB9	A	455	462	Right-handed alpha
Helix 19	AC1	A	482	492	Right-handed alpha
Helix 20	AC2	A	492	510	Right-handed alpha
Helix 21	AC3	A	520	542	Right-handed alpha
Helix 22	AC4	A	543	553	Right-handed alpha
Helix 23	AC5	A	566	574	Right-handed alpha
Helix 24	AC6	A	577	585	Right-handed alpha
Helix 25	AC7	A	599	608	Right-handed alpha
Helix 26	AC8	A	609	620	Right-handed alpha
Helix 27	AC9	A	628	639	Right-handed alpha
Helix 28	AD1	A	640	650	Right-handed alpha
Helix 29	AD2	A	663	672	Right-handed alpha
Helix 30	AD3	A	676	680	Right-handed 310
Helix 31	AD4	A	696	705	Right-handed alpha
Helix 32	AD5	A	707	724	Right-handed alpha
Helix 33	AD6	B	62	90	Right-handed alpha
Helix 34	AD7	B	94	96	Right-handed 310
Helix 35	AD8	B	97	118	Right-handed alpha
Helix 36	AD9	B	131	143	Right-handed alpha
Helix 37	AE1	B	144	151	Right-handed alpha
Helix 38	AE2	B	153	161	Right-handed alpha
Helix 39	AE3	B	164	177	Right-handed 310
Helix 40	AE4	B	178	190	Right-handed alpha
Helix 41	AE5	B	195	225	Right-handed alpha
Helix 42	AE6	B	227	231	Right-handed 310
Helix 43	AE7	B	253	270	Right-handed alpha
Helix 44	AE8	B	281	313	Right-handed alpha
Helix 45	AE9	B	314	333	Right-handed alpha
Helix 46	AF1	B	336	352	Right-handed alpha
Helix 47	AF2	B	352	362	Right-handed alpha
Helix 48	AF3	B	366	377	Right-handed alpha
Helix 49	AF4	B	377	383	Right-handed alpha
Helix 50	AF5	B	384	388	Right-handed 310
Helix 51	AF6	B	391	400	Right-handed alpha
Helix 52	AF7	B	456	461	Right-handed alpha
Helix 53	AF8	B	482	492	Right-handed alpha
Helix 54	AF9	B	492	510	Right-handed alpha
Helix 55	AG1	B	517	542	Right-handed alpha
Helix 56	AG2	B	543	554	Right-handed alpha
Helix 57	AG3	B	566	574	Right-handed alpha
Helix 58	AG4	B	576	586	Right-handed alpha
Helix 59	AG5	B	599	607	Right-handed alpha
Helix 60	AG6	B	609	620	Right-handed alpha
Helix 61	AG7	B	627	639	Right-handed alpha
Helix 62	AG8	B	640	651	Right-handed alpha
Helix 63	AG9	B	663	672	Right-handed alpha
Helix 64	AH1	B	673	683	Right-handed alpha
Helix 65	AH2	B	696	705	Right-handed alpha
Helix 66	AH3	B	706	723	Right-handed alpha
Helix 67	AH4	C	62	89	Right-handed alpha
Helix 68	AH5	C	97	116	Right-handed alpha
Helix 69	AH6	C	131	143	Right-handed alpha
Helix 70	AH7	C	144	150	Right-handed alpha
Helix 71	AH8	C	164	170	Right-handed alpha
Helix 72	AH9	C	171	176	Right-handed 310
Helix 73	AI1	C	177	191	Right-handed alpha
Helix 74	AI2	C	195	222	Right-handed alpha
Helix 75	AI3	C	248	252	Right-handed 310
Helix 76	AI4	C	253	270	Right-handed alpha
Helix 77	AI5	C	281	313	Right-handed alpha
Helix 78	AI6	C	314	334	Right-handed alpha
Helix 79	AI7	C	336	353	Right-handed alpha
Helix 80	AI8	C	356	363	Right-handed alpha
Helix 81	AI9	C	368	378	Right-handed alpha
Helix 82	AJ1	C	379	381	Right-handed 310
Helix 83	AJ2	C	391	400	Right-handed alpha
Helix 84	AJ3	C	455	462	Right-handed alpha
Helix 85	AJ4	C	482	490	Right-handed alpha
Helix 86	AJ5	C	492	510	Right-handed alpha
Helix 87	AJ6	C	520	542	Right-handed alpha
Helix 88	AJ7	C	543	553	Right-handed alpha
Helix 89	AJ8	C	566	574	Right-handed alpha
Helix 90	AJ9	C	577	585	Right-handed alpha
Helix 91	AK1	C	599	608	Right-handed alpha
Helix 92	AK2	C	609	620	Right-handed alpha
Helix 93	AK3	C	628	639	Right-handed alpha
Helix 94	AK4	C	640	650	Right-handed alpha
Helix 95	AK5	C	663	672	Right-handed alpha
Helix 96	AK6	C	676	680	Right-handed 310
Helix 97	AK7	C	696	705	Right-handed alpha
Helix 98	AK8	C	707	724	Right-handed alpha
Helix 99	AK9	D	62	90	Right-handed alpha
Helix 100	AL1	D	94	96	Right-handed 310
Helix 101	AL2	D	97	118	Right-handed alpha
Helix 102	AL3	D	131	143	Right-handed alpha
Helix 103	AL4	D	144	151	Right-handed alpha
Helix 104	AL5	D	153	161	Right-handed alpha
Helix 105	AL6	D	164	177	Right-handed 310
Helix 106	AL7	D	178	190	Right-handed alpha
Helix 107	AL8	D	195	225	Right-handed alpha
Helix 108	AL9	D	227	231	Right-handed 310
Helix 109	AM1	D	253	270	Right-handed alpha
Helix 110	AM2	D	281	313	Right-handed alpha
Helix 111	AM3	D	314	333	Right-handed alpha
Helix 112	AM4	D	336	351	Right-handed alpha
Helix 113	AM5	D	352	355	Right-handed 310
Helix 114	AM6	D	356	361	Right-handed alpha
Helix 115	AM7	D	366	377	Right-handed alpha
Helix 116	AM8	D	377	383	Right-handed alpha
Helix 117	AM9	D	391	400	Right-handed alpha
Helix 118	AN1	D	456	461	Right-handed alpha
Helix 119	AN2	D	482	492	Right-handed alpha
Helix 120	AN3	D	492	510	Right-handed alpha
Helix 121	AN4	D	517	542	Right-handed alpha
Helix 122	AN5	D	543	554	Right-handed alpha
Helix 123	AN6	D	566	574	Right-handed alpha
Helix 124	AN7	D	576	586	Right-handed alpha
Helix 125	AN8	D	599	608	Right-handed alpha
Helix 126	AN9	D	609	620	Right-handed alpha
Helix 127	AO1	D	627	639	Right-handed alpha
Helix 128	AO2	D	640	651	Right-handed alpha
Helix 129	AO3	D	663	672	Right-handed alpha
Helix 130	AO4	D	673	683	Right-handed alpha
Helix 131	AO5	D	696	705	Right-handed alpha
Helix 132	AO6	D	706	723	Right-handed alpha

There are 11 sheets in PDB entry 9KHF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	128	129	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	407	first strand
Strand 2	A	475	481	anti-parallel
Strand 3	A	422	426	anti-parallel
Strand 4	A	452	454	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	414	first strand
Strand 2	A	468	471	anti-parallel
Strand 3	A	431	434	anti-parallel
Strand 4	A	446	448	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	121	first strand
Strand 2	B	128	129	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	414	first strand
Strand 2	B	469	471	anti-parallel
Strand 3	B	431	433	anti-parallel
Strand 4	B	446	448	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	425	first strand
Strand 2	B	478	481	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	407	first strand
Strand 2	C	475	481	anti-parallel
Strand 3	C	422	426	anti-parallel
Strand 4	C	452	454	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	412	414	first strand
Strand 2	C	468	471	anti-parallel
Strand 3	C	431	434	anti-parallel
Strand 4	C	446	448	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	121	first strand
Strand 2	D	128	129	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	407	first strand
Strand 2	D	475	481	anti-parallel
Strand 3	D	422	425	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	412	414	first strand
Strand 2	D	469	471	anti-parallel
Strand 3	D	431	433	anti-parallel
Strand 4	D	446	448	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KHF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KHF