Analysis of interatomic Contacts of Structural Units in PDB entry:
9KHI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KHI entry

There are 4 chains in PDB entry 9KHI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 31ILE 775
D
 ASP 16TYR 755
C
 ASP 16PHE 753
B
 ILE 18PHE 753
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are161 helices in PDB entry 9KHI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 57Right-handed alpha
Helix 2
AA2
A
60 72Right-handed alpha
Helix 3
AA3
A
88 94Right-handed alpha
Helix 4
AA4
A
96 105Right-handed alpha
Helix 5
AA5
A
114 120Right-handed alpha
Helix 6
AA6
A
122 132Right-handed alpha
Helix 7
AA7
A
162 170Right-handed alpha
Helix 8
AA8
A
171 181Right-handed alpha
Helix 9
AA9
A
196 205Right-handed alpha
Helix 10
AB1
A
205 221Right-handed alpha
Helix 11
AB2
A
222 230Right-handed alpha
Helix 12
AB3
A
232 251Right-handed alpha
Helix 13
AB4
A
254 274Right-handed alpha
Helix 14
AB5
A
278 287Right-handed alpha
Helix 15
AB6
A
308 316Right-handed alpha
Helix 16
AB7
A
318 323Right-handed alpha
Helix 17
AB8
A
324 337Right-handed alpha
Helix 18
AB9
A
339 344Right-handed 310
Helix 19
AC1
A
346 360Right-handed alpha
Helix 20
AC2
A
360 371Right-handed alpha
Helix 21
AC3
A
376 380Right-handed 310
Helix 22
AC4
A
382 407Right-handed alpha
Helix 23
AC5
A
409 415Right-handed 310
Helix 24
AC6
A
421 446Right-handed alpha
Helix 25
AC7
A
446 453Right-handed alpha
Helix 26
AC8
A
453 480Right-handed alpha
Helix 27
AC9
A
485 489Right-handed 310
Helix 28
AD1
A
493 511Right-handed alpha
Helix 29
AD2
A
512 518Right-handed 310
Helix 30
AD3
A
523 533Right-handed alpha
Helix 31
AD4
A
533 561Right-handed alpha
Helix 32
AD5
A
580 585Right-handed 310
Helix 33
AD6
A
586 596Right-handed alpha
Helix 34
AD7
A
605 610Right-handed 310
Helix 35
AD8
A
615 635Right-handed alpha
Helix 36
AD9
A
636 655Right-handed alpha
Helix 37
AE1
A
655 670Right-handed alpha
Helix 38
AE2
A
679 684Right-handed alpha
Helix 39
AE3
A
726 751Right-handed alpha
Helix 40
AE4
A
754 775Right-handed alpha
Helix 41
AE5
D
30 43Right-handed alpha
Helix 42
AE6
D
44 59Right-handed alpha
Helix 43
AE7
D
72 80Right-handed alpha
Helix 44
AE8
D
83 93Right-handed alpha
Helix 45
AE9
D
98 107Right-handed alpha
Helix 46
AF1
D
108 117Right-handed alpha
Helix 47
AF2
D
144 153Right-handed alpha
Helix 48
AF3
D
154 163Right-handed alpha
Helix 49
AF4
D
178 188Right-handed alpha
Helix 50
AF5
D
188 204Right-handed alpha
Helix 51
AF6
D
205 213Right-handed alpha
Helix 52
AF7
D
215 232Right-handed alpha
Helix 53
AF8
D
237 257Right-handed alpha
Helix 54
AF9
D
261 270Right-handed alpha
Helix 55
AG1
D
287 296Right-handed alpha
Helix 56
AG2
D
298 303Right-handed alpha
Helix 57
AG3
D
304 316Right-handed alpha
Helix 58
AG4
D
327 340Right-handed alpha
Helix 59
AG5
D
340 351Right-handed alpha
Helix 60
AG6
D
354 360Right-handed alpha
Helix 61
AG7
D
362 387Right-handed alpha
Helix 62
AG8
D
401 426Right-handed alpha
Helix 63
AG9
D
426 433Right-handed alpha
Helix 64
AH1
D
433 460Right-handed alpha
Helix 65
AH2
D
465 469Right-handed 310
Helix 66
AH3
D
473 491Right-handed alpha
Helix 67
AH4
D
492 500Right-handed 310
Helix 68
AH5
D
502 513Right-handed alpha
Helix 69
AH6
D
513 540Right-handed alpha
Helix 70
AH7
D
541 543Right-handed 310
Helix 71
AH8
D
545 553Right-handed 310
Helix 72
AH9
D
567 578Right-handed alpha
Helix 73
AI1
D
579 581Right-handed 310
Helix 74
AI2
D
585 589Right-handed 310
Helix 75
AI3
D
594 615Right-handed alpha
Helix 76
AI4
D
615 633Right-handed alpha
Helix 77
AI5
D
634 649Right-handed alpha
Helix 78
AI6
D
658 663Right-handed alpha
Helix 79
AI7
D
707 732Right-handed alpha
Helix 80
AI8
D
733 736Right-handed 310
Helix 81
AI9
D
738 755Right-handed alpha
Helix 82
AJ1
C
30 43Right-handed alpha
Helix 83
AJ2
C
44 59Right-handed alpha
Helix 84
AJ3
C
72 80Right-handed alpha
Helix 85
AJ4
C
82 92Right-handed alpha
Helix 86
AJ5
C
98 107Right-handed alpha
Helix 87
AJ6
C
108 117Right-handed alpha
Helix 88
AJ7
C
144 153Right-handed alpha
Helix 89
AJ8
C
154 163Right-handed alpha
Helix 90
AJ9
C
178 188Right-handed alpha
Helix 91
AK1
C
188 204Right-handed alpha
Helix 92
AK2
C
205 213Right-handed alpha
Helix 93
AK3
C
215 234Right-handed alpha
Helix 94
AK4
C
237 257Right-handed alpha
Helix 95
AK5
C
261 271Right-handed alpha
Helix 96
AK6
C
287 296Right-handed alpha
Helix 97
AK7
C
298 303Right-handed alpha
Helix 98
AK8
C
304 316Right-handed alpha
Helix 99
AK9
C
326 340Right-handed alpha
Helix 100
AL1
C
340 351Right-handed alpha
Helix 101
AL2
C
354 360Right-handed alpha
Helix 102
AL3
C
362 383Right-handed alpha
Helix 103
AL4
C
384 386Right-handed 310
Helix 104
AL5
C
401 426Right-handed alpha
Helix 105
AL6
C
426 433Right-handed alpha
Helix 106
AL7
C
433 460Right-handed alpha
Helix 107
AL8
C
465 469Right-handed 310
Helix 108
AL9
C
473 491Right-handed alpha
Helix 109
AM1
C
492 500Right-handed 310
Helix 110
AM2
C
503 513Right-handed alpha
Helix 111
AM3
C
513 540Right-handed alpha
Helix 112
AM4
C
541 543Right-handed 310
Helix 113
AM5
C
549 553Right-handed 310
Helix 114
AM6
C
567 578Right-handed alpha
Helix 115
AM7
C
579 581Right-handed 310
Helix 116
AM8
C
584 589Right-handed 310
Helix 117
AM9
C
594 615Right-handed alpha
Helix 118
AN1
C
615 633Right-handed alpha
Helix 119
AN2
C
634 649Right-handed alpha
Helix 120
AN3
C
658 664Right-handed alpha
Helix 121
AN4
C
707 732Right-handed alpha
Helix 122
AN5
C
735 753Right-handed alpha
Helix 123
AN6
B
30 36Right-handed alpha
Helix 124
AN7
B
37 43Right-handed alpha
Helix 125
AN8
B
44 58Right-handed alpha
Helix 126
AN9
B
72 81Right-handed alpha
Helix 127
AO1
B
82 92Right-handed alpha
Helix 128
AO2
B
98 107Right-handed alpha
Helix 129
AO3
B
108 117Right-handed alpha
Helix 130
AO4
B
144 153Right-handed alpha
Helix 131
AO5
B
154 164Right-handed alpha
Helix 132
AO6
B
178 188Right-handed alpha
Helix 133
AO7
B
188 204Right-handed alpha
Helix 134
AO8
B
205 213Right-handed alpha
Helix 135
AO9
B
215 234Right-handed alpha
Helix 136
AP1
B
237 257Right-handed alpha
Helix 137
AP2
B
261 270Right-handed alpha
Helix 138
AP3
B
287 296Right-handed alpha
Helix 139
AP4
B
298 303Right-handed alpha
Helix 140
AP5
B
304 316Right-handed alpha
Helix 141
AP6
B
326 340Right-handed alpha
Helix 142
AP7
B
340 351Right-handed alpha
Helix 143
AP8
B
354 360Right-handed alpha
Helix 144
AP9
B
362 385Right-handed alpha
Helix 145
AQ1
B
401 426Right-handed alpha
Helix 146
AQ2
B
426 433Right-handed alpha
Helix 147
AQ3
B
434 460Right-handed alpha
Helix 148
AQ4
B
465 469Right-handed 310
Helix 149
AQ5
B
473 491Right-handed alpha
Helix 150
AQ6
B
492 500Right-handed 310
Helix 151
AQ7
B
502 513Right-handed alpha
Helix 152
AQ8
B
513 540Right-handed alpha
Helix 153
AQ9
B
541 543Right-handed 310
Helix 154
AR1
B
549 553Right-handed 310
Helix 155
AR2
B
567 578Right-handed alpha
Helix 156
AR3
B
584 589Right-handed 310
Helix 157
AR4
B
594 615Right-handed alpha
Helix 158
AR5
B
615 634Right-handed alpha
Helix 159
AR6
B
634 649Right-handed alpha
Helix 160
AR7
B
658 663Right-handed alpha
Helix 161
AR8
B
707 753Right-handed alpha
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There are 3 sheets in PDB entry 9KHI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
D
167 168anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 19first strand
Strand 2
C
167 169anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 19first strand
Strand 2
B
167 169anti-parallel
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