Analysis of interatomic Contacts of Structural Units in PDB entry:
9KHJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KHJ entry

There are 4 chains in PDB entry 9KHJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 17	LEU 758
C	ARG 17	LEU 758
B	ARG 17	LEU 758
D	ARG 17	LEU 758

There are148 helices in PDB entry 9KHJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	43	Right-handed alpha
Helix 2	AA2	A	46	58	Right-handed alpha
Helix 3	AA3	A	72	80	Right-handed alpha
Helix 4	AA4	A	82	92	Right-handed alpha
Helix 5	AA5	A	99	107	Right-handed alpha
Helix 6	AA6	A	108	117	Right-handed alpha
Helix 7	AA7	A	144	153	Right-handed alpha
Helix 8	AA8	A	154	163	Right-handed alpha
Helix 9	AA9	A	178	188	Right-handed alpha
Helix 10	AB1	A	188	204	Right-handed alpha
Helix 11	AB2	A	205	213	Right-handed alpha
Helix 12	AB3	A	215	232	Right-handed alpha
Helix 13	AB4	A	237	257	Right-handed alpha
Helix 14	AB5	A	261	270	Right-handed alpha
Helix 15	AB6	A	287	296	Right-handed alpha
Helix 16	AB7	A	298	303	Right-handed alpha
Helix 17	AB8	A	304	316	Right-handed alpha
Helix 18	AB9	A	321	325	Right-handed 310
Helix 19	AC1	A	326	340	Right-handed alpha
Helix 20	AC2	A	345	351	Right-handed alpha
Helix 21	AC3	A	362	385	Right-handed alpha
Helix 22	AC4	A	401	424	Right-handed alpha
Helix 23	AC5	A	426	431	Right-handed alpha
Helix 24	AC6	A	435	460	Right-handed alpha
Helix 25	AC7	A	465	469	Right-handed 310
Helix 26	AC8	A	473	492	Right-handed alpha
Helix 27	AC9	A	493	500	Right-handed 310
Helix 28	AD1	A	503	540	Right-handed alpha
Helix 29	AD2	A	541	543	Right-handed 310
Helix 30	AD3	A	549	553	Right-handed 310
Helix 31	AD4	A	567	578	Right-handed alpha
Helix 32	AD5	A	584	589	Right-handed 310
Helix 33	AD6	A	594	615	Right-handed alpha
Helix 34	AD7	A	615	632	Right-handed alpha
Helix 35	AD8	A	634	649	Right-handed alpha
Helix 36	AD9	A	706	732	Right-handed alpha
Helix 37	AE1	A	734	758	Right-handed alpha
Helix 38	AE2	C	30	43	Right-handed alpha
Helix 39	AE3	C	46	58	Right-handed alpha
Helix 40	AE4	C	72	80	Right-handed alpha
Helix 41	AE5	C	82	92	Right-handed alpha
Helix 42	AE6	C	99	107	Right-handed alpha
Helix 43	AE7	C	108	117	Right-handed alpha
Helix 44	AE8	C	144	153	Right-handed alpha
Helix 45	AE9	C	154	163	Right-handed alpha
Helix 46	AF1	C	178	188	Right-handed alpha
Helix 47	AF2	C	188	204	Right-handed alpha
Helix 48	AF3	C	205	213	Right-handed alpha
Helix 49	AF4	C	215	232	Right-handed alpha
Helix 50	AF5	C	237	257	Right-handed alpha
Helix 51	AF6	C	261	270	Right-handed alpha
Helix 52	AF7	C	287	296	Right-handed alpha
Helix 53	AF8	C	298	303	Right-handed alpha
Helix 54	AF9	C	304	316	Right-handed alpha
Helix 55	AG1	C	321	325	Right-handed 310
Helix 56	AG2	C	326	340	Right-handed alpha
Helix 57	AG3	C	345	351	Right-handed alpha
Helix 58	AG4	C	362	385	Right-handed alpha
Helix 59	AG5	C	401	424	Right-handed alpha
Helix 60	AG6	C	426	431	Right-handed alpha
Helix 61	AG7	C	435	460	Right-handed alpha
Helix 62	AG8	C	465	469	Right-handed 310
Helix 63	AG9	C	473	492	Right-handed alpha
Helix 64	AH1	C	493	500	Right-handed 310
Helix 65	AH2	C	503	540	Right-handed alpha
Helix 66	AH3	C	541	543	Right-handed 310
Helix 67	AH4	C	549	553	Right-handed 310
Helix 68	AH5	C	567	578	Right-handed alpha
Helix 69	AH6	C	584	589	Right-handed 310
Helix 70	AH7	C	594	615	Right-handed alpha
Helix 71	AH8	C	615	632	Right-handed alpha
Helix 72	AH9	C	634	649	Right-handed alpha
Helix 73	AI1	C	706	732	Right-handed alpha
Helix 74	AI2	C	734	758	Right-handed alpha
Helix 75	AI3	B	30	43	Right-handed alpha
Helix 76	AI4	B	46	58	Right-handed alpha
Helix 77	AI5	B	72	80	Right-handed alpha
Helix 78	AI6	B	82	92	Right-handed alpha
Helix 79	AI7	B	99	107	Right-handed alpha
Helix 80	AI8	B	108	117	Right-handed alpha
Helix 81	AI9	B	144	153	Right-handed alpha
Helix 82	AJ1	B	154	163	Right-handed alpha
Helix 83	AJ2	B	178	188	Right-handed alpha
Helix 84	AJ3	B	188	204	Right-handed alpha
Helix 85	AJ4	B	205	213	Right-handed alpha
Helix 86	AJ5	B	215	232	Right-handed alpha
Helix 87	AJ6	B	237	257	Right-handed alpha
Helix 88	AJ7	B	261	270	Right-handed alpha
Helix 89	AJ8	B	287	296	Right-handed alpha
Helix 90	AJ9	B	298	303	Right-handed alpha
Helix 91	AK1	B	304	316	Right-handed alpha
Helix 92	AK2	B	321	325	Right-handed 310
Helix 93	AK3	B	326	340	Right-handed alpha
Helix 94	AK4	B	345	351	Right-handed alpha
Helix 95	AK5	B	362	385	Right-handed alpha
Helix 96	AK6	B	401	424	Right-handed alpha
Helix 97	AK7	B	426	431	Right-handed alpha
Helix 98	AK8	B	435	460	Right-handed alpha
Helix 99	AK9	B	465	469	Right-handed 310
Helix 100	AL1	B	473	492	Right-handed alpha
Helix 101	AL2	B	493	500	Right-handed 310
Helix 102	AL3	B	503	540	Right-handed alpha
Helix 103	AL4	B	541	543	Right-handed 310
Helix 104	AL5	B	549	553	Right-handed 310
Helix 105	AL6	B	567	578	Right-handed alpha
Helix 106	AL7	B	584	589	Right-handed 310
Helix 107	AL8	B	594	615	Right-handed alpha
Helix 108	AL9	B	615	632	Right-handed alpha
Helix 109	AM1	B	634	649	Right-handed alpha
Helix 110	AM2	B	706	732	Right-handed alpha
Helix 111	AM3	B	734	758	Right-handed alpha
Helix 112	AM4	D	30	43	Right-handed alpha
Helix 113	AM5	D	46	58	Right-handed alpha
Helix 114	AM6	D	72	80	Right-handed alpha
Helix 115	AM7	D	82	92	Right-handed alpha
Helix 116	AM8	D	99	107	Right-handed alpha
Helix 117	AM9	D	108	117	Right-handed alpha
Helix 118	AN1	D	144	153	Right-handed alpha
Helix 119	AN2	D	154	163	Right-handed alpha
Helix 120	AN3	D	178	188	Right-handed alpha
Helix 121	AN4	D	188	204	Right-handed alpha
Helix 122	AN5	D	205	213	Right-handed alpha
Helix 123	AN6	D	215	232	Right-handed alpha
Helix 124	AN7	D	237	257	Right-handed alpha
Helix 125	AN8	D	261	270	Right-handed alpha
Helix 126	AN9	D	287	296	Right-handed alpha
Helix 127	AO1	D	298	303	Right-handed alpha
Helix 128	AO2	D	304	316	Right-handed alpha
Helix 129	AO3	D	321	325	Right-handed 310
Helix 130	AO4	D	326	340	Right-handed alpha
Helix 131	AO5	D	345	351	Right-handed alpha
Helix 132	AO6	D	362	385	Right-handed alpha
Helix 133	AO7	D	401	424	Right-handed alpha
Helix 134	AO8	D	426	431	Right-handed alpha
Helix 135	AO9	D	435	460	Right-handed alpha
Helix 136	AP1	D	465	469	Right-handed 310
Helix 137	AP2	D	473	492	Right-handed alpha
Helix 138	AP3	D	493	500	Right-handed 310
Helix 139	AP4	D	503	540	Right-handed alpha
Helix 140	AP5	D	541	543	Right-handed 310
Helix 141	AP6	D	549	553	Right-handed 310
Helix 142	AP7	D	567	578	Right-handed alpha
Helix 143	AP8	D	584	589	Right-handed 310
Helix 144	AP9	D	594	615	Right-handed alpha
Helix 145	AQ1	D	615	632	Right-handed alpha
Helix 146	AQ2	D	634	649	Right-handed alpha
Helix 147	AQ3	D	706	732	Right-handed alpha
Helix 148	AQ4	D	734	758	Right-handed alpha

There are 4 sheets in PDB entry 9KHJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	19	first strand
Strand 2	D	167	168	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	B	18	19	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	19	first strand
Strand 2	B	167	168	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	D	18	19	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KHJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KHJ