Analysis of interatomic Contacts of Structural Units in PDB entry:
9KHP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KHP entry

There is 1 chain in PDB entry 9KHP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 26ASP 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9KHP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 56Right-handed alpha
Helix 2
AA2
A
80 84Right-handed 310
Helix 3
AA3
A
85 89Right-handed 310
Helix 4
AA4
A
90 100Right-handed alpha
Helix 5
AA5
A
112 121Right-handed alpha
Helix 6
AA6
A
131 142Right-handed alpha
Helix 7
AA7
A
149 151Right-handed 310
Helix 8
AA8
A
152 157Right-handed alpha
Helix 9
AA9
A
172 178Right-handed 310
Helix 10
AB1
A
179 193Right-handed alpha
Helix 11
AB2
A
210 212Right-handed 310
Helix 12
AB3
A
213 223Right-handed alpha
Helix 13
AB4
A
250 259Right-handed alpha
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There are 3 sheets in PDB entry 9KHP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
239 240parallel
Strand 3
A
229 236anti-parallel
Strand 4
A
64 69anti-parallel
Strand 5
A
74 78anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
239 240parallel
Strand 3
A
229 236anti-parallel
Strand 4
A
244 247anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
124 129parallel
Strand 3
A
103 107parallel
Strand 4
A
164 169parallel
Strand 5
A
194 205parallel
Strand 6
A
274 281anti-parallel
Strand 7
A
263 271anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il