Analysis of interatomic Contacts of Structural Units in PDB entry:
9KHR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KHR entry

There is 1 chain in PDB entry 9KHR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 15HIS 183
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9KHR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 25Right-handed alpha
Helix 2
AA2
A
44 47Right-handed 310
Helix 3
AA3
A
60 77Right-handed alpha
Helix 4
AA4
A
90 102Right-handed alpha
Helix 5
AA5
A
111 118Right-handed alpha
Helix 6
AA6
A
139 144Right-handed alpha
Helix 7
AA7
A
145 147Right-handed 310
Helix 8
AA8
A
148 160Right-handed alpha
Helix 9
AA9
A
167 170Right-handed 310
Helix 10
AB1
A
171 179Right-handed alpha
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There are 2 sheets in PDB entry 9KHR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
38 42anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
81 86parallel
Strand 3
A
51 56parallel
Strand 4
A
125 129anti-parallel
Strand 5
A
135 137anti-parallel
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