Analysis of interatomic Contacts of Structural Units in PDB entry:
9KHS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KHS entry

There are 5 chains in PDB entry 9KHS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1VAL 148
D
 MET 1ASP 77
E
 MET 1GLY 76
C
 MET 1GLY 76
A
 ILE 117ALA 955
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 9KHS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
3 17Right-handed alpha
Helix 2
AA2
B
60 64Right-handed 310
Helix 3
AA3
B
87 91Right-handed 310
Helix 4
AA4
B
99 114Right-handed alpha
Helix 5
AA5
B
121 129Right-handed alpha
Helix 6
AA6
B
131 146Right-handed alpha
Helix 7
AA7
D
22 33Right-handed alpha
Helix 8
AA8
E
22 35Right-handed alpha
Helix 9
AA9
C
22 28Right-handed alpha
Helix 10
AB1
C
37 41Right-handed 310
Helix 11
AB2
C
55 59Right-handed 310
Helix 12
AB3
A
118 123Right-handed alpha
Helix 13
AB4
A
126 131Right-handed alpha
Helix 14
AB5
A
131 140Right-handed alpha
Helix 15
AB6
A
143 161Right-handed alpha
Helix 16
AB7
A
172 186Right-handed alpha
Helix 17
AB8
A
187 192Right-handed alpha
Helix 18
AB9
A
193 197Right-handed 310
Helix 19
AC1
A
207 211Right-handed 310
Helix 20
AC2
A
217 222Right-handed alpha
Helix 21
AC3
A
227 235Right-handed alpha
Helix 22
AC4
A
242 273Right-handed alpha
Helix 23
AC5
A
275 292Right-handed alpha
Helix 24
AC6
A
293 298Right-handed 310
Helix 25
AC7
A
308 324Right-handed alpha
Helix 26
AC8
A
332 337Right-handed 310
Helix 27
AC9
A
360 370Right-handed alpha
Helix 28
AD1
A
380 395Right-handed alpha
Helix 29
AD2
A
396 406Right-handed alpha
Helix 30
AD3
A
406 422Right-handed alpha
Helix 31
AD4
A
428 462Right-handed alpha
Helix 32
AD5
A
462 485Right-handed alpha
Helix 33
AD6
A
520 525Right-handed alpha
Helix 34
AD7
A
528 542Right-handed alpha
Helix 35
AD8
A
552 554Right-handed 310
Helix 36
AD9
A
555 568Right-handed alpha
Helix 37
AE1
A
574 589Right-handed alpha
Helix 38
AE2
A
600 606Right-handed alpha
Helix 39
AE3
A
609 625Right-handed alpha
Helix 40
AE4
A
638 655Right-handed alpha
Helix 41
AE5
A
655 669Right-handed alpha
Helix 42
AE6
A
669 703Right-handed alpha
Helix 43
AE7
A
721 755Right-handed alpha
Helix 44
AE8
A
755 760Right-handed alpha
Helix 45
AE9
A
761 781Right-handed alpha
Helix 46
AF1
A
781 787Right-handed alpha
Helix 47
AF2
A
791 796Right-handed alpha
Helix 48
AF3
A
798 813Right-handed alpha
Helix 49
AF4
A
816 825Right-handed alpha
Helix 50
AF5
A
831 845Right-handed alpha
Helix 51
AF6
A
850 877Right-handed alpha
Helix 52
AF7
A
882 886Right-handed 310
Helix 53
AF8
A
909 917Right-handed alpha
Helix 54
AF9
A
930 934Right-handed 310
Helix 55
AG1
A
937 953Right-handed alpha
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There are 6 sheets in PDB entry 9KHS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 27first strand
Strand 2
B
30 39anti-parallel
Strand 3
B
50 56anti-parallel
Strand 4
B
67 70anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
2 6anti-parallel
Strand 3
D
66 71parallel
Strand 4
D
41 45anti-parallel
Strand 5
D
48 49anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 16first strand
Strand 2
E
2 7anti-parallel
Strand 3
E
66 71parallel
Strand 4
E
41 45anti-parallel
Strand 5
E
48 49anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 15first strand
Strand 2
C
3 6anti-parallel
Strand 3
C
66 68parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 45first strand
Strand 2
C
48 49anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
906 908first strand
Strand 2
A
897 899anti-parallel
Strand 3
A
935 936anti-parallel
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