Analysis of interatomic Contacts of Structural Units in PDB entry:
9KHT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KHT entry

There are 12 chains in PDB entry 9KHT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 MET 1GLY 76
E
 MET 1GLY 76
F
 MET 1GLY 76
d
 MET 1GLY 76
e
 MET 1GLY 76
f
 MET 1GLY 76
C
 MET 1GLY 76
c
 MET 1GLY 76
A
 MET 1ALA 955
B
 MET 1VAL 148
a
 MET 1ALA 955
b
 MET 1VAL 148
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are135 helices in PDB entry 9KHT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
22 28Right-handed alpha
Helix 2
AA2
D
30 35Right-handed alpha
Helix 3
AA3
D
37 41Right-handed 310
Helix 4
AA4
D
55 59Right-handed 310
Helix 5
AA5
E
22 29Right-handed alpha
Helix 6
AA6
E
30 35Right-handed alpha
Helix 7
AA7
E
37 41Right-handed 310
Helix 8
AA8
E
55 59Right-handed 310
Helix 9
AA9
F
22 35Right-handed alpha
Helix 10
AB1
F
37 39Right-handed 310
Helix 11
AB2
F
55 60Right-handed 310
Helix 12
AB3
d
22 28Right-handed alpha
Helix 13
AB4
d
30 35Right-handed alpha
Helix 14
AB5
d
37 41Right-handed 310
Helix 15
AB6
d
55 60Right-handed 310
Helix 16
AB7
e
22 29Right-handed alpha
Helix 17
AB8
e
30 35Right-handed alpha
Helix 18
AB9
e
37 41Right-handed 310
Helix 19
AC1
f
22 35Right-handed alpha
Helix 20
AC2
f
37 41Right-handed 310
Helix 21
AC3
f
55 60Right-handed 310
Helix 22
AC4
C
22 28Right-handed alpha
Helix 23
AC5
C
37 41Right-handed 310
Helix 24
AC6
C
55 60Right-handed alpha
Helix 25
AC7
c
22 28Right-handed alpha
Helix 26
AC8
c
37 41Right-handed 310
Helix 27
AC9
c
55 60Right-handed alpha
Helix 28
AD1
A
2 8Right-handed alpha
Helix 29
AD2
A
35 37Right-handed 310
Helix 30
AD3
A
38 48Right-handed alpha
Helix 31
AD4
A
55 76Right-handed alpha
Helix 32
AD5
A
83 102Right-handed alpha
Helix 33
AD6
A
112 123Right-handed alpha
Helix 34
AD7
A
123 128Right-handed alpha
Helix 35
AD8
A
129 142Right-handed alpha
Helix 36
AD9
A
144 162Right-handed alpha
Helix 37
AE1
A
173 185Right-handed alpha
Helix 38
AE2
A
187 195Right-handed alpha
Helix 39
AE3
A
207 212Right-handed 310
Helix 40
AE4
A
227 236Right-handed alpha
Helix 41
AE5
A
242 273Right-handed alpha
Helix 42
AE6
A
275 292Right-handed alpha
Helix 43
AE7
A
293 298Right-handed 310
Helix 44
AE8
A
302 306Right-handed 310
Helix 45
AE9
A
308 320Right-handed alpha
Helix 46
AF1
A
322 327Right-handed alpha
Helix 47
AF2
A
333 337Right-handed 310
Helix 48
AF3
A
338 343Right-handed 310
Helix 49
AF4
A
360 372Right-handed alpha
Helix 50
AF5
A
380 396Right-handed alpha
Helix 51
AF6
A
396 406Right-handed alpha
Helix 52
AF7
A
406 417Right-handed alpha
Helix 53
AF8
A
430 461Right-handed alpha
Helix 54
AF9
A
462 485Right-handed alpha
Helix 55
AG1
A
522 526Right-handed 310
Helix 56
AG2
A
528 542Right-handed alpha
Helix 57
AG3
A
556 566Right-handed alpha
Helix 58
AG4
A
574 590Right-handed alpha
Helix 59
AG5
A
600 606Right-handed alpha
Helix 60
AG6
A
607 612Right-handed alpha
Helix 61
AG7
A
613 625Right-handed alpha
Helix 62
AG8
A
626 628Right-handed 310
Helix 63
AG9
A
636 652Right-handed alpha
Helix 64
AH1
A
655 669Right-handed alpha
Helix 65
AH2
A
669 705Right-handed alpha
Helix 66
AH3
A
720 755Right-handed alpha
Helix 67
AH4
A
755 760Right-handed alpha
Helix 68
AH5
A
761 781Right-handed alpha
Helix 69
AH6
A
781 787Right-handed alpha
Helix 70
AH7
A
798 814Right-handed alpha
Helix 71
AH8
A
816 825Right-handed alpha
Helix 72
AH9
A
832 845Right-handed alpha
Helix 73
AI1
A
850 877Right-handed alpha
Helix 74
AI2
A
909 917Right-handed alpha
Helix 75
AI3
A
930 934Right-handed 310
Helix 76
AI4
A
937 955Right-handed alpha
Helix 77
AI5
B
3 17Right-handed alpha
Helix 78
AI6
B
60 64Right-handed 310
Helix 79
AI7
B
87 93Right-handed alpha
Helix 80
AI8
B
99 109Right-handed alpha
Helix 81
AI9
B
121 131Right-handed alpha
Helix 82
AJ1
B
131 146Right-handed alpha
Helix 83
AJ2
a
2 8Right-handed alpha
Helix 84
AJ3
a
35 37Right-handed 310
Helix 85
AJ4
a
38 49Right-handed alpha
Helix 86
AJ5
a
55 76Right-handed alpha
Helix 87
AJ6
a
83 102Right-handed alpha
Helix 88
AJ7
a
112 123Right-handed alpha
Helix 89
AJ8
a
123 142Right-handed alpha
Helix 90
AJ9
a
144 151Right-handed alpha
Helix 91
AK1
a
156 161Right-handed alpha
Helix 92
AK2
a
173 187Right-handed alpha
Helix 93
AK3
a
187 195Right-handed alpha
Helix 94
AK4
a
207 211Right-handed 310
Helix 95
AK5
a
227 235Right-handed alpha
Helix 96
AK6
a
242 273Right-handed alpha
Helix 97
AK7
a
275 292Right-handed alpha
Helix 98
AK8
a
293 298Right-handed 310
Helix 99
AK9
a
302 306Right-handed 310
Helix 100
AL1
a
308 320Right-handed alpha
Helix 101
AL2
a
322 327Right-handed alpha
Helix 102
AL3
a
333 337Right-handed 310
Helix 103
AL4
a
338 343Right-handed 310
Helix 104
AL5
a
360 372Right-handed alpha
Helix 105
AL6
a
380 395Right-handed alpha
Helix 106
AL7
a
396 423Right-handed alpha
Helix 107
AL8
a
430 461Right-handed alpha
Helix 108
AL9
a
464 485Right-handed alpha
Helix 109
AM1
a
522 526Right-handed 310
Helix 110
AM2
a
528 542Right-handed alpha
Helix 111
AM3
a
556 566Right-handed alpha
Helix 112
AM4
a
568 572Right-handed 310
Helix 113
AM5
a
574 590Right-handed alpha
Helix 114
AM6
a
600 606Right-handed alpha
Helix 115
AM7
a
607 612Right-handed alpha
Helix 116
AM8
a
613 625Right-handed alpha
Helix 117
AM9
a
626 628Right-handed 310
Helix 118
AN1
a
636 655Right-handed alpha
Helix 119
AN2
a
655 669Right-handed alpha
Helix 120
AN3
a
669 705Right-handed alpha
Helix 121
AN4
a
720 755Right-handed alpha
Helix 122
AN5
a
755 760Right-handed alpha
Helix 123
AN6
a
761 781Right-handed alpha
Helix 124
AN7
a
781 787Right-handed alpha
Helix 125
AN8
a
798 814Right-handed alpha
Helix 126
AN9
a
816 825Right-handed alpha
Helix 127
AO1
a
832 845Right-handed alpha
Helix 128
AO2
a
850 877Right-handed alpha
Helix 129
AO3
a
909 919Right-handed alpha
Helix 130
AO4
a
937 955Right-handed alpha
Helix 131
AO5
b
4 17Right-handed alpha
Helix 132
AO6
b
87 92Right-handed alpha
Helix 133
AO7
b
99 109Right-handed alpha
Helix 134
AO8
b
121 131Right-handed alpha
Helix 135
AO9
b
131 146Right-handed alpha
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There are 17 sheets in PDB entry 9KHT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 3first strand
Strand 2
D
15 16anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 49first strand
Strand 2
D
42 45anti-parallel
Strand 3
D
68 70anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
13 16first strand
Strand 2
E
2 7anti-parallel
Strand 3
E
66 69parallel
Strand 4
E
43 45anti-parallel
Strand 5
E
48 49anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 16first strand
Strand 2
F
2 6anti-parallel
Strand 3
F
66 71parallel
Strand 4
F
41 44anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
d
2 3first strand
Strand 2
d
15 16anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
d
48 49first strand
Strand 2
d
42 45anti-parallel
Strand 3
d
68 70anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
e
13 16first strand
Strand 2
e
2 7anti-parallel
Strand 3
e
66 69parallel
Strand 4
e
43 45anti-parallel
Strand 5
e
48 49anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
f
12 16first strand
Strand 2
f
2 6anti-parallel
Strand 3
f
66 70parallel
Strand 4
f
42 44anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 15first strand
Strand 2
C
3 6anti-parallel
Strand 3
C
67 69parallel
Strand 4
C
43 45anti-parallel
Strand 5
C
48 50anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
12 16first strand
Strand 2
c
2 6anti-parallel
Strand 3
c
67 69parallel
Strand 4
c
43 45anti-parallel
Strand 5
c
48 50anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
21 22parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
906 908first strand
Strand 2
A
897 899anti-parallel
Strand 3
A
935 936anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
67 70anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
10 11first strand
Strand 2
a
21 22parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
906 908first strand
Strand 2
a
897 899anti-parallel
Strand 3
a
935 936anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
22 23first strand
Strand 2
b
37 39anti-parallel
Strand 3
b
50 56anti-parallel
Strand 4
b
33 34anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
22 23first strand
Strand 2
b
37 39anti-parallel
Strand 3
b
50 56anti-parallel
Strand 4
b
68 70anti-parallel
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