Analysis of interatomic Contacts of Structural Units in PDB entry:
9KHU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KHU entry

There is 1 chain in PDB entry 9KHU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 11LEU 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9KHU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 42Right-handed alpha
Helix 2
AA2
A
57 61Right-handed 310
Helix 3
AA3
A
82 109Right-handed alpha
Helix 4
AA4
A
125 133Right-handed alpha
Helix 5
AA5
A
144 153Right-handed alpha
Helix 6
AA6
A
153 160Right-handed alpha
Helix 7
AA7
A
181 185Right-handed 310
Helix 8
AA8
A
192 209Right-handed alpha
Helix 9
AA9
A
222 224Right-handed 310
Helix 10
AB1
A
225 232Right-handed alpha
Helix 11
AB2
A
242 246Right-handed 310
Helix 12
AB3
A
256 268Right-handed alpha
Helix 13
AB4
A
286 301Right-handed alpha
Helix 14
AB5
A
326 332Right-handed alpha
Helix 15
AB6
A
342 348Right-handed alpha
Helix 16
AB7
A
360 371Right-handed alpha
Helix 17
AB8
A
382 393Right-handed alpha
Helix 18
AB9
A
406 420Right-handed alpha
Helix 19
AC1
A
426 442Right-handed alpha
Helix 20
AC2
A
445 461Right-handed alpha
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There are 2 sheets in PDB entry 9KHU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 69first strand
Strand 2
A
45 51parallel
Strand 3
A
17 21parallel
Strand 4
A
114 120parallel
Strand 5
A
137 141parallel
Strand 6
A
213 215parallel
Strand 7
A
237 239parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 338first strand
Strand 2
A
304 307parallel
Strand 3
A
274 278parallel
Strand 4
A
352 357parallel
Strand 5
A
374 376parallel
Strand 6
A
397 399parallel
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