Analysis of interatomic Contacts of Structural Units in PDB entry:
9KI0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KI0 entry

There are 4 chains in PDB entry 9KI0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 1190
B	MET 1	SER 1190
C	C 2	T 11
D	T 1	T 10

There are114 helices in PDB entry 9KI0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	9	Right-handed 310
Helix 2	AA2	A	20	37	Right-handed alpha
Helix 3	AA3	A	54	78	Right-handed alpha
Helix 4	AA4	A	94	112	Right-handed alpha
Helix 5	AA5	A	121	131	Right-handed alpha
Helix 6	AA6	A	137	144	Right-handed alpha
Helix 7	AA7	A	146	157	Right-handed alpha
Helix 8	AA8	A	163	178	Right-handed alpha
Helix 9	AA9	A	181	209	Right-handed alpha
Helix 10	AB1	A	216	227	Right-handed alpha
Helix 11	AB2	A	227	235	Right-handed alpha
Helix 12	AB3	A	244	250	Right-handed alpha
Helix 13	AB4	A	259	263	Right-handed 310
Helix 14	AB5	A	276	286	Right-handed alpha
Helix 15	AB6	A	293	304	Right-handed alpha
Helix 16	AB7	A	312	316	Right-handed 310
Helix 17	AB8	A	318	337	Right-handed alpha
Helix 18	AB9	A	401	433	Right-handed alpha
Helix 19	AC1	A	443	460	Right-handed alpha
Helix 20	AC2	A	461	463	Right-handed 310
Helix 21	AC3	A	464	475	Right-handed alpha
Helix 22	AC4	A	493	498	Right-handed alpha
Helix 23	AC5	A	524	536	Right-handed alpha
Helix 24	AC6	A	556	565	Right-handed alpha
Helix 25	AC7	A	566	568	Right-handed 310
Helix 26	AC8	A	572	587	Right-handed alpha
Helix 27	AC9	A	589	593	Right-handed 310
Helix 28	AD1	A	604	616	Right-handed alpha
Helix 29	AD2	A	621	629	Right-handed alpha
Helix 30	AD3	A	639	657	Right-handed alpha
Helix 31	AD4	A	672	674	Right-handed 310
Helix 32	AD5	A	675	693	Right-handed alpha
Helix 33	AD6	A	704	711	Right-handed alpha
Helix 34	AD7	A	713	723	Right-handed alpha
Helix 35	AD8	A	733	737	Right-handed alpha
Helix 36	AD9	A	789	808	Right-handed alpha
Helix 37	AE1	A	811	825	Right-handed alpha
Helix 38	AE2	A	827	836	Right-handed alpha
Helix 39	AE3	A	838	854	Right-handed alpha
Helix 40	AE4	A	855	857	Right-handed 310
Helix 41	AE5	A	874	880	Right-handed alpha
Helix 42	AE6	A	884	888	Right-handed 310
Helix 43	AE7	A	889	901	Right-handed alpha
Helix 44	AE8	A	909	938	Right-handed alpha
Helix 45	AE9	A	943	960	Right-handed alpha
Helix 46	AF1	A	970	972	Right-handed 310
Helix 47	AF2	A	992	996	Right-handed 310
Helix 48	AF3	A	1000	1002	Right-handed 310
Helix 49	AF4	A	1009	1014	Right-handed alpha
Helix 50	AF5	A	1014	1020	Right-handed alpha
Helix 51	AF6	A	1023	1032	Right-handed alpha
Helix 52	AF7	A	1045	1051	Right-handed alpha
Helix 53	AF8	A	1052	1069	Right-handed alpha
Helix 54	AF9	A	1077	1081	Right-handed 310
Helix 55	AG1	A	1111	1127	Right-handed alpha
Helix 56	AG2	A	1176	1189	Right-handed alpha
Helix 57	AG3	B	5	9	Right-handed 310
Helix 58	AG4	B	20	38	Right-handed alpha
Helix 59	AG5	B	54	77	Right-handed alpha
Helix 60	AG6	B	94	112	Right-handed alpha
Helix 61	AG7	B	121	131	Right-handed alpha
Helix 62	AG8	B	137	144	Right-handed alpha
Helix 63	AG9	B	146	157	Right-handed alpha
Helix 64	AH1	B	162	178	Right-handed alpha
Helix 65	AH2	B	181	186	Right-handed alpha
Helix 66	AH3	B	188	209	Right-handed alpha
Helix 67	AH4	B	216	227	Right-handed alpha
Helix 68	AH5	B	227	234	Right-handed alpha
Helix 69	AH6	B	244	250	Right-handed alpha
Helix 70	AH7	B	259	263	Right-handed 310
Helix 71	AH8	B	273	286	Right-handed alpha
Helix 72	AH9	B	293	303	Right-handed alpha
Helix 73	AI1	B	312	316	Right-handed 310
Helix 74	AI2	B	322	337	Right-handed alpha
Helix 75	AI3	B	401	435	Right-handed alpha
Helix 76	AI4	B	447	460	Right-handed alpha
Helix 77	AI5	B	461	463	Right-handed 310
Helix 78	AI6	B	464	474	Right-handed alpha
Helix 79	AI7	B	475	478	Right-handed 310
Helix 80	AI8	B	493	497	Right-handed 310
Helix 81	AI9	B	524	536	Right-handed alpha
Helix 82	AJ1	B	556	565	Right-handed alpha
Helix 83	AJ2	B	566	568	Right-handed 310
Helix 84	AJ3	B	572	585	Right-handed alpha
Helix 85	AJ4	B	589	593	Right-handed 310
Helix 86	AJ5	B	604	616	Right-handed alpha
Helix 87	AJ6	B	621	629	Right-handed alpha
Helix 88	AJ7	B	636	657	Right-handed alpha
Helix 89	AJ8	B	672	674	Right-handed 310
Helix 90	AJ9	B	675	694	Right-handed alpha
Helix 91	AK1	B	704	711	Right-handed alpha
Helix 92	AK2	B	713	723	Right-handed alpha
Helix 93	AK3	B	733	737	Right-handed alpha
Helix 94	AK4	B	747	751	Right-handed 310
Helix 95	AK5	B	789	808	Right-handed alpha
Helix 96	AK6	B	811	824	Right-handed alpha
Helix 97	AK7	B	827	836	Right-handed alpha
Helix 98	AK8	B	838	854	Right-handed alpha
Helix 99	AK9	B	855	857	Right-handed 310
Helix 100	AL1	B	874	880	Right-handed alpha
Helix 101	AL2	B	889	903	Right-handed alpha
Helix 102	AL3	B	910	939	Right-handed alpha
Helix 103	AL4	B	943	960	Right-handed alpha
Helix 104	AL5	B	970	972	Right-handed 310
Helix 105	AL6	B	992	996	Right-handed 310
Helix 106	AL7	B	1000	1002	Right-handed 310
Helix 107	AL8	B	1014	1020	Right-handed alpha
Helix 108	AL9	B	1023	1032	Right-handed alpha
Helix 109	AM1	B	1045	1052	Right-handed alpha
Helix 110	AM2	B	1052	1068	Right-handed alpha
Helix 111	AM3	B	1077	1081	Right-handed 310
Helix 112	AM4	B	1111	1127	Right-handed alpha
Helix 113	AM5	B	1155	1159	Right-handed 310
Helix 114	AM6	B	1176	1190	Right-handed alpha

There are 24 sheets in PDB entry 9KI0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	47	first strand
Strand 2	A	538	542	parallel
Strand 3	A	268	272	parallel
Strand 4	A	88	92	parallel
Strand 5	A	239	243	parallel
Strand 6	A	132	134	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	114	first strand
Strand 2	A	117	118	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	252	first strand
Strand 2	A	257	258	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	292	first strand
Strand 2	A	514	521	anti-parallel
Strand 3	A	499	506	anti-parallel
Strand 4	A	354	358	anti-parallel
Strand 5	A	364	366	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	344	first strand
Strand 2	A	382	385	parallel
Strand 3	A	375	377	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	601	first strand
Strand 2	A	865	871	parallel
Strand 3	A	773	776	parallel
Strand 4	A	662	667	parallel
Strand 5	A	726	732	parallel
Strand 6	A	697	703	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	744	745	first strand
Strand 2	A	768	769	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	755	757	first strand
Strand 2	A	861	863	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	962	963	first strand
Strand 2	A	1042	1044	anti-parallel
Strand 3	A	974	976	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	997	998	first strand
Strand 2	A	983	986	anti-parallel
Strand 3	A	1006	1008	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1086	1088	first strand
Strand 2	A	1097	1102	anti-parallel
Strand 3	A	1130	1135	parallel
Strand 4	A	1161	1164	parallel
Strand 5	A	1145	1147	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1137	1138	first strand
Strand 2	A	1168	1169	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	47	first strand
Strand 2	B	538	542	parallel
Strand 3	B	268	272	parallel
Strand 4	B	88	92	parallel
Strand 5	B	239	243	parallel
Strand 6	B	132	134	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	114	first strand
Strand 2	B	117	118	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	252	first strand
Strand 2	B	257	258	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	292	first strand
Strand 2	B	514	521	anti-parallel
Strand 3	B	499	506	anti-parallel
Strand 4	B	354	358	anti-parallel
Strand 5	B	364	366	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	344	first strand
Strand 2	B	382	387	parallel
Strand 3	B	372	377	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	595	601	first strand
Strand 2	B	865	871	parallel
Strand 3	B	773	776	parallel
Strand 4	B	662	667	parallel
Strand 5	B	726	732	parallel
Strand 6	B	697	703	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	744	745	first strand
Strand 2	B	768	769	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	755	757	first strand
Strand 2	B	861	863	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	962	963	first strand
Strand 2	B	1042	1044	anti-parallel
Strand 3	B	974	976	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	997	998	first strand
Strand 2	B	984	986	anti-parallel
Strand 3	B	1006	1007	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1071	1074	first strand
Strand 2	B	1086	1090	anti-parallel
Strand 3	B	1097	1102	anti-parallel
Strand 4	B	1130	1135	parallel
Strand 5	B	1161	1164	parallel
Strand 6	B	1145	1147	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1137	1138	first strand
Strand 2	B	1168	1169	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KI0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KI0