Analysis of interatomic Contacts of Structural Units in PDB entry:
9KJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KJ6 entry

There are 4 chains in PDB entry 9KJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2GLY 1351
B
 A 2 U 98
C
 T 1 T 41
D
 A 3 A 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 65 helices in PDB entry 9KJ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 91Right-handed alpha
Helix 2
AA2
A
96 103Right-handed alpha
Helix 3
AA3
A
121 132Right-handed alpha
Helix 4
AA4
A
134 145Right-handed alpha
Helix 5
AA5
A
150 164Right-handed alpha
Helix 6
AA6
A
180 196Right-handed alpha
Helix 7
AA7
A
207 212Right-handed alpha
Helix 8
AA8
A
217 229Right-handed alpha
Helix 9
AA9
A
236 247Right-handed alpha
Helix 10
AB1
A
270 282Right-handed alpha
Helix 11
AB2
A
283 285Right-handed 310
Helix 12
AB3
A
286 306Right-handed alpha
Helix 13
AB4
A
315 342Right-handed alpha
Helix 14
AB5
A
343 345Right-handed 310
Helix 15
AB6
A
346 351Right-handed alpha
Helix 16
AB7
A
358 364Right-handed alpha
Helix 17
AB8
A
368 382Right-handed alpha
Helix 18
AB9
A
388 395Right-handed alpha
Helix 19
AC1
A
404 410Right-handed 310
Helix 20
AC2
A
411 427Right-handed alpha
Helix 21
AC3
A
430 436Right-handed alpha
Helix 22
AC4
A
436 446Right-handed alpha
Helix 23
AC5
A
477 482Right-handed alpha
Helix 24
AC6
A
483 494Right-handed alpha
Helix 25
AC7
A
512 525Right-handed alpha
Helix 26
AC8
A
541 552Right-handed alpha
Helix 27
AC9
A
560 568Right-handed alpha
Helix 28
AD1
A
591 602Right-handed alpha
Helix 29
AD2
A
603 609Right-handed alpha
Helix 30
AD3
A
612 626Right-handed alpha
Helix 31
AD4
A
628 637Right-handed alpha
Helix 32
AD5
A
638 643Right-handed 310
Helix 33
AD6
A
644 654Right-handed alpha
Helix 34
AD7
A
664 668Right-handed alpha
Helix 35
AD8
A
679 685Right-handed alpha
Helix 36
AD9
A
692 698Right-handed alpha
Helix 37
AE1
A
703 712Right-handed alpha
Helix 38
AE2
A
719 727Right-handed alpha
Helix 39
AE3
A
730 751Right-handed alpha
Helix 40
AE4
A
774 792Right-handed alpha
Helix 41
AE5
A
794 799Right-handed alpha
Helix 42
AE6
A
808 817Right-handed alpha
Helix 43
AE7
A
860 864Right-handed 310
Helix 44
AE8
A
872 889Right-handed alpha
Helix 45
AE9
A
893 902Right-handed alpha
Helix 46
AF1
A
903 906Right-handed 310
Helix 47
AF2
A
910 920Right-handed alpha
Helix 48
AF3
A
925 940Right-handed alpha
Helix 49
AF4
A
959 970Right-handed alpha
Helix 50
AF5
A
980 1001Right-handed alpha
Helix 51
AF6
A
1002 1008Right-handed 310
Helix 52
AF7
A
1031 1039Right-handed alpha
Helix 53
AF8
A
1041 1047Right-handed 310
Helix 54
AF9
A
1078 1088Right-handed alpha
Helix 55
AG1
A
1127 1132Right-handed alpha
Helix 56
AG2
A
1170 1175Right-handed alpha
Helix 57
AG3
A
1177 1185Right-handed alpha
Helix 58
AG4
A
1229 1242Right-handed alpha
Helix 59
AG5
A
1248 1266Right-handed alpha
Helix 60
AG6
A
1269 1282Right-handed alpha
Helix 61
AG7
A
1283 1285Right-handed 310
Helix 62
AG8
A
1286 1298Right-handed alpha
Helix 63
AG9
A
1299 1302Right-handed 310
Helix 64
AH1
A
1326 1329Right-handed 310
Helix 65
AH2
A
1348 1351Right-handed 310
Back to top of page

There are 11 sheets in PDB entry 9KJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 957first strand
Strand 2
A
758 763parallel
Strand 3
A
6 11parallel
Strand 4
A
15 21anti-parallel
Strand 5
A
48 52anti-parallel
Strand 6
A
1093 1096parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
42 45anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
1342 1346parallel
Strand 3
A
1331 1335anti-parallel
Strand 4
A
1202 1205anti-parallel
Strand 5
A
1211 1214anti-parallel
Strand 6
A
1220 1222anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 509first strand
Strand 2
A
659 663anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
671 672first strand
Strand 2
A
677 678anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
837 840first strand
Strand 2
A
855 858anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1050 1052first strand
Strand 2
A
1055 1057anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1063 1066first strand
Strand 2
A
1069 1075anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1120 1121first strand
Strand 2
A
1133 1134anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1164first strand
Strand 2
A
1142 1151anti-parallel
Strand 3
A
1196 1198anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1309 1310first strand
Strand 2
A
1315 1316anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il