Analysis of interatomic Contacts of Structural Units in PDB entry:
9KJC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KJC entry

There is 1 chain in PDB entry 9KJC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 21ILE 1252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 9KJC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 29Right-handed 310
Helix 2
AA2
A
34 71Right-handed alpha
Helix 3
AA3
A
75 130Right-handed alpha
Helix 4
AA4
A
139 160Right-handed alpha
Helix 5
AA5
A
161 184Right-handed alpha
Helix 6
AA6
A
186 233Right-handed alpha
Helix 7
AA7
A
233 240Right-handed alpha
Helix 8
AA8
A
242 297Right-handed alpha
Helix 9
AA9
A
302 343Right-handed alpha
Helix 10
AB1
A
409 414Right-handed alpha
Helix 11
AB2
A
432 434Right-handed 310
Helix 12
AB3
A
439 441Right-handed 310
Helix 13
AB4
A
456 462Right-handed alpha
Helix 14
AB5
A
470 479Right-handed alpha
Helix 15
AB6
A
482 487Right-handed alpha
Helix 16
AB7
A
511 521Right-handed alpha
Helix 17
AB8
A
536 548Right-handed alpha
Helix 18
AB9
A
589 593Right-handed 310
Helix 19
AC1
A
595 605Right-handed alpha
Helix 20
AC2
A
671 680Right-handed alpha
Helix 21
AC3
A
683 715Right-handed alpha
Helix 22
AC4
A
719 773Right-handed alpha
Helix 23
AC5
A
775 780Right-handed alpha
Helix 24
AC6
A
788 829Right-handed alpha
Helix 25
AC7
A
831 853Right-handed alpha
Helix 26
AC8
A
854 856Right-handed 310
Helix 27
AC9
A
860 865Right-handed alpha
Helix 28
AD1
A
865 878Right-handed alpha
Helix 29
AD2
A
878 884Right-handed alpha
Helix 30
AD3
A
889 941Right-handed alpha
Helix 31
AD4
A
948 968Right-handed alpha
Helix 32
AD5
A
968 975Right-handed alpha
Helix 33
AD6
A
982 988Right-handed alpha
Helix 34
AD7
A
1050 1053Right-handed 310
Helix 35
AD8
A
1054 1059Right-handed alpha
Helix 36
AD9
A
1077 1079Right-handed 310
Helix 37
AE1
A
1080 1086Right-handed alpha
Helix 38
AE2
A
1115 1123Right-handed alpha
Helix 39
AE3
A
1127 1133Right-handed alpha
Helix 40
AE4
A
1150 1166Right-handed alpha
Helix 41
AE5
A
1185 1194Right-handed alpha
Helix 42
AE6
A
1229 1235Right-handed alpha
Helix 43
AE7
A
1239 1252Right-handed alpha
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There are 6 sheets in PDB entry 9KJC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 390first strand
Strand 2
A
365 371anti-parallel
Strand 3
A
421 426anti-parallel
Strand 4
A
429 430anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
557 558first strand
Strand 2
A
397 399parallel
Strand 3
A
571 574parallel
Strand 4
A
579 581anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 445first strand
Strand 2
A
524 526parallel
Strand 3
A
554 555parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1031 1034first strand
Strand 2
A
1011 1015anti-parallel
Strand 3
A
1069 1071anti-parallel
Strand 4
A
1074 1075anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1040 1041first strand
Strand 2
A
1199 1201parallel
Strand 3
A
1169 1171parallel
Strand 4
A
1088 1090parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1216 1220first strand
Strand 2
A
1223 1228anti-parallel
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