Analysis of interatomic Contacts of Structural Units in PDB entry:
9KJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KJU entry

There are 2 chains in PDB entry 9KJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 161ALA 631
B
 GLN 30GLU 493
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 9KJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
166 174Right-handed alpha
Helix 2
AA2
A
179 206Right-handed alpha
Helix 3
AA3
A
218 222Right-handed 310
Helix 4
AA4
A
231 236Right-handed alpha
Helix 5
AA5
A
243 247Right-handed 310
Helix 6
AA6
A
248 256Right-handed alpha
Helix 7
AA7
A
287 301Right-handed alpha
Helix 8
AA8
A
324 342Right-handed alpha
Helix 9
AA9
A
350 354Right-handed 310
Helix 10
AB1
A
356 372Right-handed alpha
Helix 11
AB2
A
385 392Right-handed alpha
Helix 12
AB3
A
412 428Right-handed alpha
Helix 13
AB4
A
441 445Right-handed 310
Helix 14
AB5
A
447 449Right-handed 310
Helix 15
AB6
A
450 460Right-handed alpha
Helix 16
AB7
A
509 514Right-handed alpha
Helix 17
AB8
A
519 532Right-handed alpha
Helix 18
AB9
A
534 539Right-handed alpha
Helix 19
AC1
A
585 589Right-handed 310
Helix 20
AC2
B
38 51Right-handed alpha
Helix 21
AC3
B
53 58Right-handed alpha
Helix 22
AC4
B
60 67Right-handed alpha
Helix 23
AC5
B
68 98Right-handed alpha
Helix 24
AC6
B
103 112Right-handed alpha
Helix 25
AC7
B
113 126Right-handed alpha
Helix 26
AC8
B
126 144Right-handed alpha
Helix 27
AC9
B
154 176Right-handed alpha
Helix 28
AD1
B
176 209Right-handed alpha
Helix 29
AD2
B
224 239Right-handed alpha
Helix 30
AD3
B
244 252Right-handed 310
Helix 31
AD4
B
254 285Right-handed alpha
Helix 32
AD5
B
286 291Right-handed alpha
Helix 33
AD6
B
295 305Right-handed alpha
Helix 34
AD7
B
310 341Right-handed alpha
Helix 35
AD8
B
345 350Right-handed 310
Helix 36
AD9
B
358 373Right-handed alpha
Helix 37
AE1
B
378 384Right-handed 310
Helix 38
AE2
B
385 407Right-handed alpha
Helix 39
AE3
B
418 438Right-handed alpha
Helix 40
AE4
B
439 452Right-handed alpha
Helix 41
AE5
B
453 460Right-handed alpha
Helix 42
AE6
B
469 488Right-handed alpha
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There are 6 sheets in PDB entry 9KJU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
376 380parallel
Strand 3
A
345 348parallel
Strand 4
A
304 308parallel
Strand 5
A
259 262parallel
Strand 6
A
225 228parallel
Strand 7
A
463 468parallel
Strand 8
A
432 434parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
277 281anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 545first strand
Strand 2
A
551 557anti-parallel
Strand 3
A
563 569anti-parallel
Strand 4
A
622 627anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
575 576first strand
Strand 2
A
616 617anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
593 594first strand
Strand 2
A
610 611anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 352first strand
Strand 2
B
489 490anti-parallel
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