Analysis of interatomic Contacts of Structural Units in PDB entry:
9KK8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KK8 entry

There are 2 chains in PDB entry 9KK8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4ASN 192
A
 CYS 194GLN 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9KK8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 22Right-handed alpha
Helix 2
AA2
A
23 25Right-handed 310
Helix 3
AA3
A
31 36Right-handed alpha
Helix 4
AA4
A
38 51Right-handed alpha
Helix 5
AA5
A
64 77Right-handed alpha
Helix 6
AA6
A
89 102Right-handed alpha
Helix 7
AA7
A
118 129Right-handed alpha
Helix 8
AA8
A
149 160Right-handed alpha
Helix 9
AA9
A
208 213Right-handed alpha
Helix 10
AB1
A
224 235Right-handed alpha
Helix 11
AB2
A
244 262Right-handed alpha
Helix 12
AB3
A
262 285Right-handed alpha
Helix 13
AB4
A
292 296Right-handed 310
Helix 14
AB5
A
312 323Right-handed alpha
Helix 15
AB6
A
347 362Right-handed alpha
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There are 3 sheets in PDB entry 9KK8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
325 326parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 62first strand
Strand 2
A
201 207anti-parallel
Strand 3
A
186 190anti-parallel
Strand 4
A
163 167parallel
Strand 5
A
134 138parallel
Strand 6
A
83 86parallel
Strand 7
A
106 109parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 304first strand
Strand 2
A
337 341anti-parallel
Strand 3
A
328 329anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il