Analysis of interatomic Contacts of Structural Units in PDB entry:
9KK9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KK9 entry

There are 6 chains in PDB entry 9KK9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4ASN 192
A
 CYS 194GLN 365
B
 GLU 4ASN 192
B
 CYS 194GLN 365
C
 GLU 4ASN 192
C
 CYS 194GLN 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 9KK9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 22Right-handed alpha
Helix 2
AA2
A
23 25Right-handed 310
Helix 3
AA3
A
31 38Right-handed alpha
Helix 4
AA4
A
38 51Right-handed alpha
Helix 5
AA5
A
64 77Right-handed alpha
Helix 6
AA6
A
89 102Right-handed alpha
Helix 7
AA7
A
118 129Right-handed alpha
Helix 8
AA8
A
150 160Right-handed alpha
Helix 9
AA9
A
178 183Right-handed alpha
Helix 10
AB1
A
208 213Right-handed alpha
Helix 11
AB2
A
224 235Right-handed alpha
Helix 12
AB3
A
244 262Right-handed alpha
Helix 13
AB4
A
262 285Right-handed alpha
Helix 14
AB5
A
292 296Right-handed 310
Helix 15
AB6
A
312 322Right-handed alpha
Helix 16
AB7
A
347 361Right-handed alpha
Helix 17
AB8
B
16 22Right-handed alpha
Helix 18
AB9
B
23 25Right-handed 310
Helix 19
AC1
B
31 36Right-handed alpha
Helix 20
AC2
B
38 51Right-handed alpha
Helix 21
AC3
B
64 77Right-handed alpha
Helix 22
AC4
B
89 102Right-handed alpha
Helix 23
AC5
B
118 129Right-handed alpha
Helix 24
AC6
B
149 160Right-handed alpha
Helix 25
AC7
B
178 183Right-handed alpha
Helix 26
AC8
B
208 213Right-handed alpha
Helix 27
AC9
B
224 235Right-handed alpha
Helix 28
AD1
B
244 262Right-handed alpha
Helix 29
AD2
B
262 285Right-handed alpha
Helix 30
AD3
B
292 296Right-handed 310
Helix 31
AD4
B
312 323Right-handed alpha
Helix 32
AD5
B
347 362Right-handed alpha
Helix 33
AD6
C
16 22Right-handed alpha
Helix 34
AD7
C
23 25Right-handed 310
Helix 35
AD8
C
31 38Right-handed alpha
Helix 36
AD9
C
38 51Right-handed alpha
Helix 37
AE1
C
64 77Right-handed alpha
Helix 38
AE2
C
89 102Right-handed alpha
Helix 39
AE3
C
118 129Right-handed alpha
Helix 40
AE4
C
150 160Right-handed alpha
Helix 41
AE5
C
178 183Right-handed alpha
Helix 42
AE6
C
208 213Right-handed alpha
Helix 43
AE7
C
224 235Right-handed alpha
Helix 44
AE8
C
244 262Right-handed alpha
Helix 45
AE9
C
262 285Right-handed alpha
Helix 46
AF1
C
292 296Right-handed 310
Helix 47
AF2
C
312 322Right-handed alpha
Helix 48
AF3
C
347 362Right-handed alpha
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There are 9 sheets in PDB entry 9KK9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
325 326parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 62first strand
Strand 2
A
201 207anti-parallel
Strand 3
A
186 190anti-parallel
Strand 4
A
163 167parallel
Strand 5
A
134 138parallel
Strand 6
A
83 86parallel
Strand 7
A
106 109parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 304first strand
Strand 2
A
337 341anti-parallel
Strand 3
A
328 329anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
325 326parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 62first strand
Strand 2
B
201 207anti-parallel
Strand 3
B
186 190anti-parallel
Strand 4
B
163 167parallel
Strand 5
B
134 138parallel
Strand 6
B
83 86parallel
Strand 7
B
106 109parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 304first strand
Strand 2
B
337 341anti-parallel
Strand 3
B
328 329anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 7first strand
Strand 2
C
325 326parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 62first strand
Strand 2
C
201 207anti-parallel
Strand 3
C
186 190anti-parallel
Strand 4
C
163 167parallel
Strand 5
C
134 138parallel
Strand 6
C
83 86parallel
Strand 7
C
106 109parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
300 304first strand
Strand 2
C
337 341anti-parallel
Strand 3
C
328 329anti-parallel
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