Analysis of interatomic Contacts of Structural Units in PDB entry:
9KKB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KKB entry

There are 2 chains in PDB entry 9KKB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5TYR 405
B
 VAL 4ASN 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 9KKB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 30Right-handed alpha
Helix 2
AA2
A
32 52Right-handed alpha
Helix 3
AA3
A
67 72Right-handed alpha
Helix 4
AA4
A
92 95Right-handed 310
Helix 5
AA5
A
98 110Right-handed alpha
Helix 6
AA6
A
114 119Right-handed alpha
Helix 7
AA7
A
168 180Right-handed alpha
Helix 8
AA8
A
212 229Right-handed alpha
Helix 9
AA9
A
233 239Right-handed alpha
Helix 10
AB1
A
242 261Right-handed alpha
Helix 11
AB2
A
268 278Right-handed alpha
Helix 12
AB3
A
302 307Right-handed alpha
Helix 13
AB4
A
308 310Right-handed 310
Helix 14
AB5
A
311 330Right-handed alpha
Helix 15
AB6
A
332 337Right-handed alpha
Helix 16
AB7
A
339 347Right-handed alpha
Helix 17
AB8
A
347 352Right-handed alpha
Helix 18
AB9
A
352 364Right-handed alpha
Helix 19
AC1
A
364 374Right-handed alpha
Helix 20
AC2
B
14 22Right-handed alpha
Helix 21
AC3
B
23 25Right-handed 310
Helix 22
AC4
B
121 138Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 9KKB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
86 90anti-parallel
Strand 3
A
141 142parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
136 138anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
165 167anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
263 264parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 285first strand
Strand 2
A
288 290anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 378first strand
Strand 2
A
385 387anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 34first strand
Strand 2
B
39 46anti-parallel
Strand 3
B
55 61anti-parallel
Strand 4
B
68 73anti-parallel
Strand 5
B
98 100anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il