Analysis of interatomic Contacts of Structural Units in PDB entry:
9KKC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KKC entry

There is 1 chain in PDB entry 9KKC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1009TYR 1317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9KKC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1015 1020Right-handed 310
Helix 2
AA2
A
1128 1132Right-handed 310
Helix 3
AA3
A
1133 1141Right-handed alpha
Helix 4
AA4
A
1178 1190Right-handed alpha
Helix 5
AA5
A
1210 1214Right-handed 310
Helix 6
AA6
A
1216 1227Right-handed alpha
Helix 7
AA7
A
1250 1258Right-handed alpha
Helix 8
AA8
A
1258 1268Right-handed alpha
Helix 9
AA9
A
1280 1295Right-handed alpha
Helix 10
AB1
A
1298 1309Right-handed alpha
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There are 3 sheets in PDB entry 9KKC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1092 1095first strand
Strand 2
A
1072 1076anti-parallel
Strand 3
A
1147 1154anti-parallel
Strand 4
A
1035 1044anti-parallel
Strand 5
A
1054 1060anti-parallel
Strand 6
A
1109 1115anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1080 1081first strand
Strand 2
A
1084 1088anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1231 1237first strand
Strand 2
A
1201 1208parallel
Strand 3
A
1168 1174parallel
Strand 4
A
1271 1277parallel
Strand 5
A
1312 1317parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il