Analysis of interatomic Contacts of Structural Units in PDB entry:
9KKK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KKK entry

There is 1 chain in PDB entry 9KKK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ALA 524
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9KKK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 11Right-handed alpha
Helix 2
AA2
A
14 26Right-handed alpha
Helix 3
AA3
A
27 42Right-handed alpha
Helix 4
AA4
A
119 125Right-handed alpha
Helix 5
AA5
A
127 131Right-handed 310
Helix 6
AA6
A
132 160Right-handed alpha
Helix 7
AA7
A
161 180Right-handed alpha
Helix 8
AA8
A
184 214Right-handed alpha
Helix 9
AA9
A
219 244Right-handed alpha
Helix 10
AB1
A
246 256Right-handed alpha
Helix 11
AB2
A
256 265Right-handed alpha
Helix 12
AB3
A
271 278Right-handed alpha
Helix 13
AB4
A
281 296Right-handed alpha
Helix 14
AB5
A
299 303Right-handed 310
Helix 15
AB6
A
305 313Right-handed alpha
Helix 16
AB7
A
326 331Right-handed alpha
Helix 17
AB8
A
335 357Right-handed alpha
Helix 18
AB9
A
360 364Right-handed 310
Helix 19
AC1
A
366 392Right-handed alpha
Helix 20
AC2
A
393 415Right-handed alpha
Helix 21
AC3
A
419 449Right-handed alpha
Helix 22
AC4
A
453 478Right-handed alpha
Helix 23
AC5
A
484 499Right-handed alpha
Helix 24
AC6
A
500 504Right-handed 310
Helix 25
AC7
A
515 524Right-handed alpha
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There are 2 sheets in PDB entry 9KKK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
109 111anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
102 103anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il