Analysis of interatomic Contacts of Structural Units in PDB entry:
9KKM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KKM entry

There are 2 chains in PDB entry 9KKM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 18	GLU 1393
B	PRO 18	GLU 1393

There are127 helices in PDB entry 9KKM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	31	Right-handed alpha
Helix 2	AA2	A	50	64	Right-handed alpha
Helix 3	AA3	A	65	73	Right-handed alpha
Helix 4	AA4	A	73	79	Right-handed alpha
Helix 5	AA5	A	84	91	Right-handed alpha
Helix 6	AA6	A	130	134	Right-handed 310
Helix 7	AA7	A	136	153	Right-handed alpha
Helix 8	AA8	A	169	175	Right-handed alpha
Helix 9	AA9	A	176	190	Right-handed alpha
Helix 10	AB1	A	205	213	Right-handed alpha
Helix 11	AB2	A	229	232	Right-handed 310
Helix 12	AB3	A	233	241	Right-handed alpha
Helix 13	AB4	A	243	252	Right-handed alpha
Helix 14	AB5	A	254	261	Right-handed alpha
Helix 15	AB6	A	277	279	Right-handed 310
Helix 16	AB7	A	280	304	Right-handed alpha
Helix 17	AB8	A	305	320	Right-handed alpha
Helix 18	AB9	A	322	333	Right-handed alpha
Helix 19	AC1	A	345	363	Right-handed alpha
Helix 20	AC2	A	382	402	Right-handed alpha
Helix 21	AC3	A	409	425	Right-handed alpha
Helix 22	AC4	A	443	465	Right-handed alpha
Helix 23	AC5	A	467	482	Right-handed alpha
Helix 24	AC6	A	483	488	Right-handed alpha
Helix 25	AC7	A	498	505	Right-handed alpha
Helix 26	AC8	A	505	532	Right-handed alpha
Helix 27	AC9	A	532	544	Right-handed alpha
Helix 28	AD1	A	547	563	Right-handed alpha
Helix 29	AD2	A	571	583	Right-handed alpha
Helix 30	AD3	A	587	600	Right-handed alpha
Helix 31	AD4	A	607	620	Right-handed alpha
Helix 32	AD5	A	620	628	Right-handed alpha
Helix 33	AD6	A	631	635	Right-handed 310
Helix 34	AD7	A	640	644	Right-handed 310
Helix 35	AD8	A	649	674	Right-handed alpha
Helix 36	AD9	A	677	684	Right-handed alpha
Helix 37	AE1	A	706	717	Right-handed alpha
Helix 38	AE2	A	749	753	Right-handed 310
Helix 39	AE3	A	755	773	Right-handed alpha
Helix 40	AE4	A	786	794	Right-handed 310
Helix 41	AE5	A	795	812	Right-handed alpha
Helix 42	AE6	A	824	829	Right-handed alpha
Helix 43	AE7	A	830	834	Right-handed 310
Helix 44	AE8	A	860	865	Right-handed alpha
Helix 45	AE9	A	887	896	Right-handed alpha
Helix 46	AF1	A	905	916	Right-handed alpha
Helix 47	AF2	A	932	937	Right-handed alpha
Helix 48	AF3	A	948	962	Right-handed alpha
Helix 49	AF4	A	971	975	Right-handed 310
Helix 50	AF5	A	977	982	Right-handed alpha
Helix 51	AF6	A	996	1000	Right-handed 310
Helix 52	AF7	A	1003	1014	Right-handed alpha
Helix 53	AF8	A	1029	1039	Right-handed alpha
Helix 54	AF9	A	1047	1056	Right-handed alpha
Helix 55	AG1	A	1056	1067	Right-handed alpha
Helix 56	AG2	A	1081	1093	Right-handed alpha
Helix 57	AG3	A	1114	1134	Right-handed alpha
Helix 58	AG4	A	1189	1207	Right-handed alpha
Helix 59	AG5	A	1238	1247	Right-handed alpha
Helix 60	AG6	A	1249	1258	Right-handed alpha
Helix 61	AG7	A	1341	1356	Right-handed alpha
Helix 62	AG8	A	1364	1372	Right-handed alpha
Helix 63	AG9	A	1374	1380	Right-handed alpha
Helix 64	AH1	A	1385	1392	Right-handed alpha
Helix 65	AH2	B	19	31	Right-handed alpha
Helix 66	AH3	B	50	64	Right-handed alpha
Helix 67	AH4	B	65	74	Right-handed alpha
Helix 68	AH5	B	75	78	Right-handed 310
Helix 69	AH6	B	84	91	Right-handed alpha
Helix 70	AH7	B	130	134	Right-handed 310
Helix 71	AH8	B	136	153	Right-handed alpha
Helix 72	AH9	B	169	175	Right-handed alpha
Helix 73	AI1	B	176	190	Right-handed alpha
Helix 74	AI2	B	205	213	Right-handed alpha
Helix 75	AI3	B	229	232	Right-handed 310
Helix 76	AI4	B	233	241	Right-handed alpha
Helix 77	AI5	B	243	252	Right-handed alpha
Helix 78	AI6	B	254	261	Right-handed alpha
Helix 79	AI7	B	277	304	Right-handed alpha
Helix 80	AI8	B	305	320	Right-handed alpha
Helix 81	AI9	B	322	333	Right-handed alpha
Helix 82	AJ1	B	345	361	Right-handed alpha
Helix 83	AJ2	B	382	401	Right-handed alpha
Helix 84	AJ3	B	405	408	Right-handed 310
Helix 85	AJ4	B	409	425	Right-handed alpha
Helix 86	AJ5	B	443	465	Right-handed alpha
Helix 87	AJ6	B	467	481	Right-handed alpha
Helix 88	AJ7	B	483	489	Right-handed alpha
Helix 89	AJ8	B	498	505	Right-handed alpha
Helix 90	AJ9	B	508	532	Right-handed alpha
Helix 91	AK1	B	532	544	Right-handed alpha
Helix 92	AK2	B	547	566	Right-handed alpha
Helix 93	AK3	B	571	583	Right-handed alpha
Helix 94	AK4	B	587	600	Right-handed alpha
Helix 95	AK5	B	607	620	Right-handed alpha
Helix 96	AK6	B	620	628	Right-handed alpha
Helix 97	AK7	B	631	635	Right-handed 310
Helix 98	AK8	B	640	644	Right-handed 310
Helix 99	AK9	B	649	674	Right-handed alpha
Helix 100	AL1	B	677	685	Right-handed alpha
Helix 101	AL2	B	706	717	Right-handed alpha
Helix 102	AL3	B	749	753	Right-handed 310
Helix 103	AL4	B	755	773	Right-handed alpha
Helix 104	AL5	B	786	794	Right-handed 310
Helix 105	AL6	B	795	812	Right-handed alpha
Helix 106	AL7	B	860	864	Right-handed 310
Helix 107	AL8	B	865	870	Right-handed alpha
Helix 108	AL9	B	886	896	Right-handed alpha
Helix 109	AM1	B	905	917	Right-handed alpha
Helix 110	AM2	B	932	936	Right-handed 310
Helix 111	AM3	B	948	962	Right-handed alpha
Helix 112	AM4	B	972	976	Right-handed 310
Helix 113	AM5	B	977	983	Right-handed alpha
Helix 114	AM6	B	996	1000	Right-handed 310
Helix 115	AM7	B	1003	1014	Right-handed alpha
Helix 116	AM8	B	1029	1039	Right-handed alpha
Helix 117	AM9	B	1047	1056	Right-handed alpha
Helix 118	AN1	B	1056	1067	Right-handed alpha
Helix 119	AN2	B	1081	1093	Right-handed alpha
Helix 120	AN3	B	1114	1133	Right-handed alpha
Helix 121	AN4	B	1189	1208	Right-handed alpha
Helix 122	AN5	B	1239	1247	Right-handed alpha
Helix 123	AN6	B	1249	1258	Right-handed alpha
Helix 124	AN7	B	1341	1356	Right-handed alpha
Helix 125	AN8	B	1364	1374	Right-handed alpha
Helix 126	AN9	B	1374	1380	Right-handed alpha
Helix 127	AO1	B	1385	1393	Right-handed alpha

There are 20 sheets in PDB entry 9KKM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	102	first strand
Strand 2	A	105	113	anti-parallel
Strand 3	A	118	126	anti-parallel
Strand 4	A	157	163	parallel
Strand 5	A	195	204	parallel
Strand 6	A	224	226	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	102	first strand
Strand 2	A	105	113	anti-parallel
Strand 3	A	118	126	anti-parallel
Strand 4	A	157	163	parallel
Strand 5	A	195	204	parallel
Strand 6	A	216	220	parallel
Strand 7	A	267	268	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	367	first strand
Strand 2	A	696	698	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	687	691	first strand
Strand 2	A	724	733	anti-parallel
Strand 3	A	736	745	anti-parallel
Strand 4	A	776	782	parallel
Strand 5	A	816	823	parallel
Strand 6	A	838	842	parallel
Strand 7	A	878	880	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	988	991	first strand
Strand 2	A	965	970	parallel
Strand 3	A	942	945	parallel
Strand 4	A	1018	1020	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1110	1112	first strand
Strand 2	A	1096	1100	anti-parallel
Strand 3	A	1138	1142	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1225	1232	first strand
Strand 2	A	1211	1220	anti-parallel
Strand 3	A	1147	1156	anti-parallel
Strand 4	A	1162	1174	anti-parallel
Strand 5	A	1177	1182	anti-parallel
Strand 6	A	1273	1280	anti-parallel
Strand 7	A	1331	1339	anti-parallel
Strand 8	A	1312	1316	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1282	1286	first strand
Strand 2	A	1292	1296	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1299	1300	first strand
Strand 2	A	1323	1324	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1304	1305	first strand
Strand 2	A	1357	1358	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	102	first strand
Strand 2	B	105	113	anti-parallel
Strand 3	B	118	126	anti-parallel
Strand 4	B	157	161	parallel
Strand 5	B	195	199	parallel
Strand 6	B	216	220	parallel
Strand 7	B	266	268	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	204	first strand
Strand 2	B	224	226	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	367	first strand
Strand 2	B	696	697	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	686	691	first strand
Strand 2	B	724	733	anti-parallel
Strand 3	B	736	745	anti-parallel
Strand 4	B	776	780	parallel
Strand 5	B	815	819	parallel
Strand 6	B	838	842	parallel
Strand 7	B	879	880	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	988	991	first strand
Strand 2	B	965	970	parallel
Strand 3	B	942	946	parallel
Strand 4	B	1018	1021	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1110	1112	first strand
Strand 2	B	1096	1100	anti-parallel
Strand 3	B	1138	1142	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1225	1232	first strand
Strand 2	B	1211	1220	anti-parallel
Strand 3	B	1147	1156	anti-parallel
Strand 4	B	1162	1174	anti-parallel
Strand 5	B	1177	1182	anti-parallel
Strand 6	B	1273	1280	anti-parallel
Strand 7	B	1331	1339	anti-parallel
Strand 8	B	1312	1316	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1282	1286	first strand
Strand 2	B	1292	1296	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1299	1300	first strand
Strand 2	B	1323	1324	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1304	1305	first strand
Strand 2	B	1357	1358	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KKM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KKM