Analysis of interatomic Contacts of Structural Units in PDB entry:
9KKW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KKW entry

There are 4 chains in PDB entry 9KKW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 19ALA 672
B
 GLN 28HIS 52
H
 UNK 1UNK 117
L
 UNK 1UNK 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 9KKW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 45Right-handed alpha
Helix 2
AA2
A
65 73Right-handed alpha
Helix 3
AA3
A
77 91Right-handed alpha
Helix 4
AA4
A
95 113Right-handed alpha
Helix 5
AA5
A
113 120Right-handed alpha
Helix 6
AA6
A
124 134Right-handed alpha
Helix 7
AA7
A
136 154Right-handed alpha
Helix 8
AA8
A
154 171Right-handed alpha
Helix 9
AA9
A
173 191Right-handed alpha
Helix 10
AB1
A
192 196Right-handed 310
Helix 11
AB2
A
197 202Right-handed alpha
Helix 12
AB3
A
203 224Right-handed alpha
Helix 13
AB4
A
225 233Right-handed alpha
Helix 14
AB5
A
234 236Right-handed 310
Helix 15
AB6
A
252 257Right-handed alpha
Helix 16
AB7
A
275 294Right-handed alpha
Helix 17
AB8
A
294 303Right-handed alpha
Helix 18
AB9
A
306 322Right-handed alpha
Helix 19
AC1
A
323 339Right-handed alpha
Helix 20
AC2
A
339 344Right-handed alpha
Helix 21
AC3
A
347 355Right-handed alpha
Helix 22
AC4
A
361 363Right-handed 310
Helix 23
AC5
A
364 373Right-handed alpha
Helix 24
AC6
A
375 409Right-handed alpha
Helix 25
AC7
A
409 414Right-handed alpha
Helix 26
AC8
A
418 447Right-handed alpha
Helix 27
AC9
A
448 450Right-handed 310
Helix 28
AD1
A
451 462Right-handed alpha
Helix 29
AD2
A
463 477Right-handed alpha
Helix 30
AD3
A
481 507Right-handed alpha
Helix 31
AD4
A
518 523Right-handed alpha
Helix 32
AD5
A
525 546Right-handed alpha
Helix 33
AD6
A
552 556Right-handed 310
Helix 34
AD7
A
560 564Right-handed 310
Helix 35
AD8
A
648 671Right-handed alpha
Helix 36
AD9
B
29 52Right-handed alpha
Helix 37
AE1
H
87 91Right-handed 310
Helix 38
AE2
H
101 104Right-handed 310
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There are 5 sheets in PDB entry 9KKW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
5 6first strand
Strand 2
H
18 23anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
57 60first strand
Strand 2
H
45 52anti-parallel
Strand 3
H
33 39anti-parallel
Strand 4
H
93 99anti-parallel
Strand 5
H
106 108anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
57 60first strand
Strand 2
H
45 52anti-parallel
Strand 3
H
33 39anti-parallel
Strand 4
H
93 99anti-parallel
Strand 5
H
113 114anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 6first strand
Strand 2
L
19 24anti-parallel
Strand 3
L
71 75anti-parallel
Strand 4
L
62 66anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
53 54first strand
Strand 2
L
46 49anti-parallel
Strand 3
L
34 38anti-parallel
Strand 4
L
85 89anti-parallel
Strand 5
L
102 103anti-parallel
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