Analysis of interatomic Contacts of Structural Units in PDB entry:
9KL8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KL8 entry

There are 4 chains in PDB entry 9KL8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 G 1 G 11
C
 A 22 A 22
C
 DG 24 C 29
A
 MET 11LEU 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9KL8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 23Right-handed 310
Helix 2
AA2
A
34 39Right-handed alpha
Helix 3
AA3
A
79 83Right-handed 310
Helix 4
AA4
A
89 101Right-handed alpha
Helix 5
AA5
A
105 116Right-handed alpha
Helix 6
AA6
A
117 125Right-handed alpha
Helix 7
AA7
A
136 146Right-handed alpha
Helix 8
AA8
A
151 167Right-handed alpha
Helix 9
AA9
A
183 188Right-handed alpha
Helix 10
AB1
A
191 198Right-handed alpha
Helix 11
AB2
A
199 200Right-handed 310
Helix 12
AB3
A
201 202Right-handed 310
Helix 13
AB4
A
203 219Right-handed alpha
Helix 14
AB5
A
221 227Right-handed alpha
Helix 15
AB6
A
228 230Right-handed 310
Helix 16
AB7
A
232 241Right-handed alpha
Helix 17
AB8
A
247 259Right-handed alpha
Helix 18
AB9
A
268 278Right-handed alpha
Helix 19
AC1
A
292 308Right-handed alpha
Helix 20
AC2
A
310 323Right-handed alpha
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There are 2 sheets in PDB entry 9KL8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
72 78anti-parallel
Strand 3
A
62 68anti-parallel
Strand 4
A
54 59anti-parallel
Strand 5
A
47 51anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 173first strand
Strand 2
A
176 179anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il