Analysis of interatomic Contacts of Structural Units in PDB entry:
9KLD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KLD entry

There are 4 chains in PDB entry 9KLD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ILE 6GLU 160
A
 MET 1THR 269
C
 THR 35GLN 725
D
 ASP 607ALA 885
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 9KLD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
19 26Right-handed alpha
Helix 2
AA2
B
26 32Right-handed alpha
Helix 3
AA3
B
48 64Right-handed alpha
Helix 4
AA4
B
83 91Right-handed alpha
Helix 5
AA5
B
94 109Right-handed alpha
Helix 6
AA6
B
110 126Right-handed alpha
Helix 7
AA7
B
129 138Right-handed alpha
Helix 8
AA8
B
144 156Right-handed alpha
Helix 9
AA9
A
2 8Right-handed alpha
Helix 10
AB1
A
29 34Right-handed 310
Helix 11
AB2
A
36 40Right-handed 310
Helix 12
AB3
A
58 62Right-handed 310
Helix 13
AB4
A
65 68Right-handed 310
Helix 14
AB5
A
69 84Right-handed alpha
Helix 15
AB6
A
97 108Right-handed alpha
Helix 16
AB7
A
135 155Right-handed alpha
Helix 17
AB8
A
162 166Right-handed 310
Helix 18
AB9
A
170 175Right-handed alpha
Helix 19
AC1
A
176 180Right-handed 310
Helix 20
AC2
A
182 196Right-handed alpha
Helix 21
AC3
A
199 205Right-handed 310
Helix 22
AC4
A
222 232Right-handed alpha
Helix 23
AC5
A
247 252Right-handed alpha
Helix 24
AC6
A
252 266Right-handed alpha
Helix 25
AC7
C
36 40Right-handed 310
Helix 26
AC8
C
41 51Right-handed alpha
Helix 27
AC9
C
54 62Right-handed alpha
Helix 28
AD1
C
65 76Right-handed alpha
Helix 29
AD2
C
87 91Right-handed 310
Helix 30
AD3
C
118 120Right-handed 310
Helix 31
AD4
C
121 132Right-handed alpha
Helix 32
AD5
C
144 152Right-handed alpha
Helix 33
AD6
C
153 155Right-handed 310
Helix 34
AD7
C
176 181Right-handed alpha
Helix 35
AD8
C
202 209Right-handed alpha
Helix 36
AD9
C
211 218Right-handed alpha
Helix 37
AE1
C
233 244Right-handed alpha
Helix 38
AE2
C
265 276Right-handed alpha
Helix 39
AE3
C
287 291Right-handed 310
Helix 40
AE4
C
293 298Right-handed alpha
Helix 41
AE5
C
313 323Right-handed alpha
Helix 42
AE6
C
341 352Right-handed alpha
Helix 43
AE7
C
375 380Right-handed 310
Helix 44
AE8
C
395 406Right-handed alpha
Helix 45
AE9
C
421 432Right-handed alpha
Helix 46
AF1
C
448 456Right-handed alpha
Helix 47
AF2
C
547 553Right-handed alpha
Helix 48
AF3
C
583 590Right-handed 310
Helix 49
AF4
C
616 626Right-handed alpha
Helix 50
AF5
C
652 661Right-handed alpha
Helix 51
AF6
C
675 680Right-handed alpha
Helix 52
AF7
C
681 685Right-handed 310
Helix 53
AF8
C
710 723Right-handed alpha
Helix 54
AF9
D
608 621Right-handed alpha
Helix 55
AG1
D
623 640Right-handed alpha
Helix 56
AG2
D
661 677Right-handed alpha
Helix 57
AG3
D
696 700Right-handed 310
Helix 58
AG4
D
703 715Right-handed alpha
Helix 59
AG5
D
729 743Right-handed alpha
Helix 60
AG6
D
862 866Right-handed 310
Helix 61
AG7
D
867 869Right-handed 310
Helix 62
AG8
D
870 877Right-handed alpha
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There are 4 sheets in PDB entry 9KLD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 14first strand
Strand 2
A
45 48anti-parallel
Strand 3
A
19 23parallel
Strand 4
A
89 93parallel
Strand 5
A
112 118parallel
Strand 6
A
209 214parallel
Strand 7
A
236 241parallel
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There are 20 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 80first strand
Strand 2
C
100 102parallel
Strand 3
C
137 141parallel
Strand 4
C
160 165parallel
Strand 5
C
191 197parallel
Strand 6
C
220 223parallel
Strand 7
C
249 253parallel
Strand 8
C
281 285parallel
Strand 9
C
329 338parallel
Strand 10
C
357 363parallel
Strand 11
C
385 389parallel
Strand 12
C
411 415parallel
Strand 13
C
438 442parallel
Strand 14
C
465 469parallel
Strand 15
C
535 541parallel
Strand 16
C
562 570parallel
Strand 17
C
595 604parallel
Strand 18
C
635 639parallel
Strand 19
C
667 670parallel
Strand 20
C
690 693parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
682 685first strand
Strand 2
D
719 723parallel
Strand 3
D
759 763parallel
Strand 4
D
653 658parallel
Strand 5
D
879 882parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
744 746first strand
Strand 2
D
752 754anti-parallel
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