Analysis of interatomic Contacts of Structural Units in PDB entry:
9KLL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KLL entry

There are 2 chains in PDB entry 9KLL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 3GLU 160
C
 THR 34ASP 704
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 9KLL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
20 24Right-handed alpha
Helix 2
AA2
B
26 33Right-handed alpha
Helix 3
AA3
B
36 41Right-handed alpha
Helix 4
AA4
B
48 71Right-handed alpha
Helix 5
AA5
B
78 91Right-handed alpha
Helix 6
AA6
B
94 109Right-handed alpha
Helix 7
AA7
B
110 126Right-handed alpha
Helix 8
AA8
B
129 138Right-handed alpha
Helix 9
AA9
B
144 156Right-handed alpha
Helix 10
AB1
C
36 40Right-handed 310
Helix 11
AB2
C
41 51Right-handed alpha
Helix 12
AB3
C
54 62Right-handed alpha
Helix 13
AB4
C
65 76Right-handed alpha
Helix 14
AB5
C
84 91Right-handed 310
Helix 15
AB6
C
120 132Right-handed alpha
Helix 16
AB7
C
144 152Right-handed alpha
Helix 17
AB8
C
153 155Right-handed 310
Helix 18
AB9
C
176 186Right-handed alpha
Helix 19
AC1
C
202 211Right-handed alpha
Helix 20
AC2
C
211 218Right-handed alpha
Helix 21
AC3
C
233 244Right-handed alpha
Helix 22
AC4
C
265 276Right-handed alpha
Helix 23
AC5
C
288 291Right-handed 310
Helix 24
AC6
C
313 323Right-handed alpha
Helix 25
AC7
C
341 352Right-handed alpha
Helix 26
AC8
C
375 380Right-handed 310
Helix 27
AC9
C
395 406Right-handed alpha
Helix 28
AD1
C
421 432Right-handed alpha
Helix 29
AD2
C
448 456Right-handed alpha
Helix 30
AD3
C
547 553Right-handed alpha
Helix 31
AD4
C
583 590Right-handed 310
Helix 32
AD5
C
616 626Right-handed alpha
Helix 33
AD6
C
652 660Right-handed alpha
Helix 34
AD7
C
675 683Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9KLL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 19first strand
Strand 2
B
5 9anti-parallel
Strand 3
B
42 43parallel
Back to list of sheets
Back to top of page

There are 20 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 80first strand
Strand 2
C
100 102parallel
Strand 3
C
137 141parallel
Strand 4
C
160 165parallel
Strand 5
C
191 197parallel
Strand 6
C
220 223parallel
Strand 7
C
249 254parallel
Strand 8
C
281 286parallel
Strand 9
C
329 338parallel
Strand 10
C
357 363parallel
Strand 11
C
385 389parallel
Strand 12
C
411 415parallel
Strand 13
C
438 442parallel
Strand 14
C
465 469parallel
Strand 15
C
535 541parallel
Strand 16
C
562 570parallel
Strand 17
C
595 604parallel
Strand 18
C
635 639parallel
Strand 19
C
667 670parallel
Strand 20
C
690 693parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
650 651first strand
Strand 2
C
673 674parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il