Analysis of interatomic Contacts of Structural Units in PDB entry:
9KLO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KLO entry

There are 4 chains in PDB entry 9KLO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4GLY 1489
B
 G 1 C 115
C
 G 14 G 47
D
 C 5 T 37
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 9KLO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 52Right-handed alpha
Helix 2
AA2
A
53 54Right-handed 310
Helix 3
AA3
A
55 60Right-handed 310
Helix 4
AA4
A
70 85Right-handed alpha
Helix 5
AA5
A
95 97Right-handed 310
Helix 6
AA6
A
106 125Right-handed alpha
Helix 7
AA7
A
128 139Right-handed alpha
Helix 8
AA8
A
139 144Right-handed alpha
Helix 9
AA9
A
156 168Right-handed alpha
Helix 10
AB1
A
176 185Right-handed alpha
Helix 11
AB2
A
186 192Right-handed alpha
Helix 12
AB3
A
214 228Right-handed alpha
Helix 13
AB4
A
234 251Right-handed alpha
Helix 14
AB5
A
257 269Right-handed alpha
Helix 15
AB6
A
270 273Right-handed 310
Helix 16
AB7
A
278 286Right-handed alpha
Helix 17
AB8
A
293 305Right-handed alpha
Helix 18
AB9
A
309 330Right-handed alpha
Helix 19
AC1
A
337 352Right-handed alpha
Helix 20
AC2
A
365 371Right-handed 310
Helix 21
AC3
A
382 418Right-handed alpha
Helix 22
AC4
A
419 424Right-handed 310
Helix 23
AC5
A
425 444Right-handed alpha
Helix 24
AC6
A
453 458Right-handed 310
Helix 25
AC7
A
459 468Right-handed alpha
Helix 26
AC8
A
474 486Right-handed alpha
Helix 27
AC9
A
496 503Right-handed alpha
Helix 28
AD1
A
504 512Right-handed 310
Helix 29
AD2
A
513 517Right-handed 310
Helix 30
AD3
A
524 543Right-handed alpha
Helix 31
AD4
A
572 577Right-handed alpha
Helix 32
AD5
A
616 622Right-handed alpha
Helix 33
AD6
A
641 648Right-handed alpha
Helix 34
AD7
A
674 686Right-handed alpha
Helix 35
AD8
A
691 704Right-handed alpha
Helix 36
AD9
A
720 729Right-handed alpha
Helix 37
AE1
A
742 747Right-handed 310
Helix 38
AE2
A
748 752Right-handed 310
Helix 39
AE3
A
783 794Right-handed alpha
Helix 40
AE4
A
868 882Right-handed alpha
Helix 41
AE5
A
887 895Right-handed alpha
Helix 42
AE6
A
900 914Right-handed alpha
Helix 43
AE7
A
936 966Right-handed alpha
Helix 44
AE8
A
984 988Right-handed 310
Helix 45
AE9
A
996 1015Right-handed alpha
Helix 46
AF1
A
1021 1029Right-handed alpha
Helix 47
AF2
A
1054 1073Right-handed alpha
Helix 48
AF3
A
1075 1108Right-handed alpha
Helix 49
AF4
A
1111 1115Right-handed 310
Helix 50
AF5
A
1116 1120Right-handed 310
Helix 51
AF6
A
1126 1140Right-handed alpha
Helix 52
AF7
A
1140 1146Right-handed alpha
Helix 53
AF8
A
1162 1190Right-handed alpha
Helix 54
AF9
A
1232 1240Right-handed alpha
Helix 55
AG1
A
1243 1258Right-handed alpha
Helix 56
AG2
A
1269 1273Right-handed 310
Helix 57
AG3
A
1295 1309Right-handed alpha
Helix 58
AG4
A
1311 1325Right-handed alpha
Helix 59
AG5
A
1355 1360Right-handed 310
Helix 60
AG6
A
1363 1375Right-handed alpha
Helix 61
AG7
A
1457 1481Right-handed alpha
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There are 8 sheets in PDB entry 9KLO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 562first strand
Strand 2
A
669 672anti-parallel
Strand 3
A
709 716anti-parallel
Strand 4
A
7 17anti-parallel
Strand 5
A
606 614anti-parallel
Strand 6
A
595 601anti-parallel
Strand 7
A
569 571anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 90first strand
Strand 2
A
151 155anti-parallel
Strand 3
A
99 102anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
363 364anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
635 637first strand
Strand 2
A
656 658parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
805 812first strand
Strand 2
A
823 831anti-parallel
Strand 3
A
847 856anti-parallel
Strand 4
A
774 782anti-parallel
Strand 5
A
763 768anti-parallel
Strand 6
A
1216 1220parallel
Strand 7
A
1261 1265parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
969 972first strand
Strand 2
A
976 979anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1338 1341first strand
Strand 2
A
1281 1287anti-parallel
Strand 3
A
1347 1350anti-parallel
Strand 4
A
1361 1362anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1387 1391first strand
Strand 2
A
1438 1442anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il