Analysis of interatomic Contacts of Structural Units in PDB entry:
9KM6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KM6 entry

There are 2 chains in PDB entry 9KM6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 26ASP 283
B
 GLY 26ASP 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 9KM6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 56Right-handed alpha
Helix 2
AA2
A
80 84Right-handed 310
Helix 3
AA3
A
85 89Right-handed 310
Helix 4
AA4
A
90 100Right-handed alpha
Helix 5
AA5
A
112 122Right-handed alpha
Helix 6
AA6
A
131 142Right-handed alpha
Helix 7
AA7
A
149 151Right-handed 310
Helix 8
AA8
A
152 157Right-handed alpha
Helix 9
AA9
A
172 177Right-handed alpha
Helix 10
AB1
A
179 193Right-handed alpha
Helix 11
AB2
A
211 223Right-handed alpha
Helix 12
AB3
A
250 258Right-handed alpha
Helix 13
AB4
B
44 56Right-handed alpha
Helix 14
AB5
B
80 84Right-handed 310
Helix 15
AB6
B
85 89Right-handed 310
Helix 16
AB7
B
90 99Right-handed alpha
Helix 17
AB8
B
112 121Right-handed alpha
Helix 18
AB9
B
131 142Right-handed alpha
Helix 19
AC1
B
149 151Right-handed 310
Helix 20
AC2
B
152 157Right-handed alpha
Helix 21
AC3
B
172 177Right-handed alpha
Helix 22
AC4
B
179 193Right-handed alpha
Helix 23
AC5
B
210 212Right-handed 310
Helix 24
AC6
B
213 224Right-handed alpha
Helix 25
AC7
B
250 258Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9KM6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
239 240parallel
Strand 3
A
230 236anti-parallel
Strand 4
A
64 69anti-parallel
Strand 5
A
74 78anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
239 240parallel
Strand 3
A
230 236anti-parallel
Strand 4
A
244 246anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
125 129parallel
Strand 3
A
104 107parallel
Strand 4
A
164 169parallel
Strand 5
A
194 205parallel
Strand 6
A
274 281anti-parallel
Strand 7
A
263 271anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 42first strand
Strand 2
B
239 240parallel
Strand 3
B
229 236anti-parallel
Strand 4
B
64 69anti-parallel
Strand 5
B
74 78anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 42first strand
Strand 2
B
239 240parallel
Strand 3
B
229 236anti-parallel
Strand 4
B
244 247anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 147first strand
Strand 2
B
124 129parallel
Strand 3
B
103 107parallel
Strand 4
B
164 169parallel
Strand 5
B
194 205parallel
Strand 6
B
274 281anti-parallel
Strand 7
B
263 271anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il