Analysis of interatomic Contacts of Structural Units in PDB entry:
9KMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KMA entry

There is 1 chain in PDB entry 9KMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 78GLU 605
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 9KMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
87 104Right-handed alpha
Helix 2
AA2
A
113 122Right-handed alpha
Helix 3
AA3
A
137 143Right-handed alpha
Helix 4
AA4
A
207 213Right-handed alpha
Helix 5
AA5
A
217 221Right-handed 310
Helix 6
AA6
A
237 244Right-handed alpha
Helix 7
AA7
A
252 260Right-handed alpha
Helix 8
AA8
A
262 274Right-handed alpha
Helix 9
AA9
A
279 287Right-handed alpha
Helix 10
AB1
A
288 297Right-handed alpha
Helix 11
AB2
A
300 313Right-handed alpha
Helix 12
AB3
A
316 327Right-handed alpha
Helix 13
AB4
A
329 334Right-handed alpha
Helix 14
AB5
A
347 361Right-handed alpha
Helix 15
AB6
A
372 385Right-handed alpha
Helix 16
AB7
A
386 389Right-handed 310
Helix 17
AB8
A
403 410Right-handed alpha
Helix 18
AB9
A
415 434Right-handed alpha
Helix 19
AC1
A
435 440Right-handed alpha
Helix 20
AC2
A
450 452Right-handed 310
Helix 21
AC3
A
453 464Right-handed alpha
Helix 22
AC4
A
473 484Right-handed alpha
Helix 23
AC5
A
490 500Right-handed alpha
Helix 24
AC6
A
521 538Right-handed alpha
Helix 25
AC7
A
551 559Right-handed alpha
Helix 26
AC8
A
564 582Right-handed alpha
Helix 27
AC9
A
586 599Right-handed alpha
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There are 4 sheets in PDB entry 9KMA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
129 133anti-parallel
Strand 3
A
183 188parallel
Strand 4
A
174 178anti-parallel
Strand 5
A
161 162anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 224first strand
Strand 2
A
231 232anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
277 278parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 341first strand
Strand 2
A
392 394anti-parallel
Strand 3
A
400 402anti-parallel
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