Analysis of interatomic Contacts of Structural Units in PDB entry:
9KMC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KMC entry

There are 6 chains in PDB entry 9KMC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 22GLY 186
B
 ALA 27ALA 234
C
 THR 54SER 248
D
 ALA 21THR 153
E
 GLN 1LYS 220
F
 GLN 1CYS 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9KMC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
27 49Right-handed alpha
Helix 2
AA2
D
55 60Right-handed alpha
Helix 3
AA3
D
72 75Right-handed 310
Helix 4
AA4
D
76 94Right-handed alpha
Helix 5
AA5
D
101 118Right-handed alpha
Helix 6
AA6
D
133 153Right-handed alpha
Helix 7
AA7
E
28 32Right-handed 310
Helix 8
AA8
E
87 91Right-handed 310
Helix 9
AA9
E
133 137Right-handed 310
Helix 10
AB1
E
193 197Right-handed 310
Helix 11
AB2
F
78 82Right-handed 310
Helix 12
AB3
F
182 188Right-handed alpha
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There are 26 sheets in PDB entry 9KMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
147 152anti-parallel
Strand 3
A
165 167anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
124 125anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
64 70anti-parallel
Strand 3
A
46 48anti-parallel
Strand 4
A
140 141anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
82 84anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
184 185anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 38first strand
Strand 2
B
43 50anti-parallel
Strand 3
B
83 89anti-parallel
Strand 4
B
77 80anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 75first strand
Strand 2
B
59 65anti-parallel
Strand 3
B
104 112anti-parallel
Strand 4
B
115 124anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 143first strand
Strand 2
B
148 153anti-parallel
Strand 3
B
192 195anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 186first strand
Strand 2
B
165 172anti-parallel
Strand 3
B
203 212anti-parallel
Strand 4
B
227 230anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 108first strand
Strand 2
C
111 117anti-parallel
Strand 3
C
70 74anti-parallel
Strand 4
C
60 65anti-parallel
Strand 5
C
152 153parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 101first strand
Strand 2
C
86 92anti-parallel
Strand 3
C
127 133anti-parallel
Strand 4
C
141 147anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
158 166first strand
Strand 2
C
169 175anti-parallel
Strand 3
C
207 211anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
198 202first strand
Strand 2
C
184 191anti-parallel
Strand 3
C
223 226anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
198 202first strand
Strand 2
C
184 191anti-parallel
Strand 3
C
218 221anti-parallel
Strand 4
C
244 247anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 67first strand
Strand 2
D
127 132anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 6first strand
Strand 2
E
18 25anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
68 73anti-parallel
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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
113 117parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
34 39anti-parallel
Strand 5
E
45 51anti-parallel
Strand 6
E
58 60anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
113 117parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
106 109anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
126 130first strand
Strand 2
E
141 151anti-parallel
Strand 3
E
182 191anti-parallel
Strand 4
E
175 176anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
157 158first strand
Strand 2
E
204 206anti-parallel
Strand 3
E
211 213anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
200 201first strand
Strand 2
E
216 217anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 7first strand
Strand 2
F
19 25anti-parallel
Strand 3
F
69 74anti-parallel
Strand 4
F
61 66anti-parallel
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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 13first strand
Strand 2
F
101 105parallel
Strand 3
F
84 89anti-parallel
Strand 4
F
33 37anti-parallel
Strand 5
F
44 48anti-parallel
Strand 6
F
52 53anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 13first strand
Strand 2
F
101 105parallel
Strand 3
F
84 89anti-parallel
Strand 4
F
96 97anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
113 117first strand
Strand 2
F
128 138anti-parallel
Strand 3
F
172 181anti-parallel
Strand 4
F
158 162anti-parallel
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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
143 149first strand
Strand 2
F
190 197anti-parallel
Strand 3
F
204 209anti-parallel
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