Analysis of interatomic Contacts of Structural Units in PDB entry:
9KMG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KMG entry

There are 14 chains in PDB entry 9KMG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 28	VAL 319
B	ALA 28	VAL 319
C	ALA 28	VAL 319
D	ALA 29	VAL 319
E	ALA 28	VAL 319
F	ALA 29	VAL 319
G	MET 31	VAL 319
a	ASP 11	LEU 158
b	GLN 3	LEU 158
c	GLN 3	LEU 158
d	GLN 3	LEU 158
e	GLN 3	LEU 158
f	GLN 3	LEU 158
g	GLN 3	LEU 158

There are 59 helices in PDB entry 9KMG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	40	Right-handed 310
Helix 2	AA2	A	55	60	Right-handed alpha
Helix 3	AA3	A	119	129	Right-handed alpha
Helix 4	AA4	A	132	155	Right-handed alpha
Helix 5	AA5	A	185	204	Right-handed alpha
Helix 6	AA6	A	216	220	Right-handed 310
Helix 7	AA7	A	233	240	Right-handed alpha
Helix 8	AA8	A	251	255	Right-handed 310
Helix 9	AA9	B	55	60	Right-handed alpha
Helix 10	AB1	B	119	129	Right-handed alpha
Helix 11	AB2	B	132	155	Right-handed alpha
Helix 12	AB3	B	163	167	Right-handed 310
Helix 13	AB4	B	185	204	Right-handed alpha
Helix 14	AB5	B	216	220	Right-handed 310
Helix 15	AB6	B	233	242	Right-handed alpha
Helix 16	AB7	B	251	255	Right-handed 310
Helix 17	AB8	C	36	38	Right-handed 310
Helix 18	AB9	C	55	60	Right-handed alpha
Helix 19	AC1	C	119	129	Right-handed alpha
Helix 20	AC2	C	132	155	Right-handed alpha
Helix 21	AC3	C	185	204	Right-handed alpha
Helix 22	AC4	C	216	220	Right-handed 310
Helix 23	AC5	C	233	242	Right-handed alpha
Helix 24	AC6	C	251	255	Right-handed 310
Helix 25	AC7	C	309	311	Right-handed 310
Helix 26	AC8	D	119	129	Right-handed alpha
Helix 27	AC9	D	132	154	Right-handed alpha
Helix 28	AD1	D	185	204	Right-handed alpha
Helix 29	AD2	D	216	220	Right-handed 310
Helix 30	AD3	D	221	225	Right-handed 310
Helix 31	AD4	D	233	242	Right-handed alpha
Helix 32	AD5	D	251	255	Right-handed 310
Helix 33	AD6	D	309	311	Right-handed 310
Helix 34	AD7	E	35	38	Right-handed 310
Helix 35	AD8	E	55	60	Right-handed alpha
Helix 36	AD9	E	119	129	Right-handed alpha
Helix 37	AE1	E	132	155	Right-handed alpha
Helix 38	AE2	E	185	204	Right-handed alpha
Helix 39	AE3	E	216	220	Right-handed 310
Helix 40	AE4	E	233	242	Right-handed alpha
Helix 41	AE5	E	251	254	Right-handed 310
Helix 42	AE6	E	309	311	Right-handed 310
Helix 43	AE7	F	35	40	Right-handed 310
Helix 44	AE8	F	55	60	Right-handed alpha
Helix 45	AE9	F	119	129	Right-handed alpha
Helix 46	AF1	F	132	154	Right-handed alpha
Helix 47	AF2	F	185	204	Right-handed alpha
Helix 48	AF3	F	216	220	Right-handed 310
Helix 49	AF4	F	233	242	Right-handed alpha
Helix 50	AF5	F	252	254	Right-handed 310
Helix 51	AF6	F	309	311	Right-handed 310
Helix 52	AF7	G	35	38	Right-handed 310
Helix 53	AF8	G	119	129	Right-handed alpha
Helix 54	AF9	G	132	155	Right-handed alpha
Helix 55	AG1	G	185	204	Right-handed alpha
Helix 56	AG2	G	216	220	Right-handed 310
Helix 57	AG3	G	233	242	Right-handed alpha
Helix 58	AG4	G	252	255	Right-handed 310
Helix 59	AG5	G	309	311	Right-handed 310

There are 58 sheets in PDB entry 9KMG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	A	274	277	parallel
Strand 3	A	306	307	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	81	first strand
Strand 2	A	98	107	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	118	first strand
Strand 2	A	293	302	anti-parallel
Strand 3	A	283	284	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	118	first strand
Strand 2	A	293	302	anti-parallel
Strand 3	A	288	290	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	174	first strand
Strand 2	A	313	317	parallel
Strand 3	A	263	267	anti-parallel
Strand 4	A	212	215	anti-parallel
Strand 5	A	246	249	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	180	first strand
Strand 2	A	183	184	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	C	72	81	parallel
Strand 3	B	47	48	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	C	72	81	parallel
Strand 3	C	98	107	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	63	first strand
Strand 2	B	274	277	parallel
Strand 3	B	305	307	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	105	first strand
Strand 2	B	72	81	anti-parallel
Strand 3	G	40	42	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	105	first strand
Strand 2	B	72	81	anti-parallel
Strand 3	G	47	48	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	G	109	118	anti-parallel
Strand 3	G	293	302	anti-parallel
Strand 4	G	280	284	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	284	first strand
Strand 2	B	293	302	anti-parallel
Strand 3	B	109	118	anti-parallel
Strand 4	C	85	86	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	174	first strand
Strand 2	B	313	317	parallel
Strand 3	B	263	267	anti-parallel
Strand 4	B	212	215	anti-parallel
Strand 5	B	246	249	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	180	first strand
Strand 2	B	183	184	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	42	first strand
Strand 2	D	72	81	parallel
Strand 3	C	47	48	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	42	first strand
Strand 2	D	72	81	parallel
Strand 3	D	98	105	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	289	first strand
Strand 2	C	293	302	anti-parallel
Strand 3	C	109	118	anti-parallel
Strand 4	D	85	86	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	174	first strand
Strand 2	C	313	317	parallel
Strand 3	C	263	267	anti-parallel
Strand 4	C	212	215	anti-parallel
Strand 5	C	246	249	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	180	first strand
Strand 2	C	183	184	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	276	first strand
Strand 2	C	305	307	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	42	first strand
Strand 2	E	73	81	parallel
Strand 3	D	47	48	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	42	first strand
Strand 2	E	73	81	parallel
Strand 3	E	98	105	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	63	first strand
Strand 2	D	274	277	parallel
Strand 3	D	305	307	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	284	first strand
Strand 2	D	293	302	anti-parallel
Strand 3	D	109	118	anti-parallel
Strand 4	E	85	86	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	174	first strand
Strand 2	D	313	317	parallel
Strand 3	D	263	267	anti-parallel
Strand 4	D	212	215	anti-parallel
Strand 5	D	246	249	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	42	first strand
Strand 2	F	72	81	parallel
Strand 3	E	47	48	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	42	first strand
Strand 2	F	72	81	parallel
Strand 3	F	98	105	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	109	118	first strand
Strand 2	E	293	302	anti-parallel
Strand 3	E	283	284	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	171	174	first strand
Strand 2	E	313	317	parallel
Strand 3	E	263	267	anti-parallel
Strand 4	E	212	215	anti-parallel
Strand 5	E	246	249	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	179	180	first strand
Strand 2	E	183	184	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	274	276	first strand
Strand 2	E	305	307	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	42	first strand
Strand 2	G	72	81	parallel
Strand 3	F	47	48	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	42	first strand
Strand 2	G	72	81	parallel
Strand 3	G	98	107	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	283	284	first strand
Strand 2	F	293	302	anti-parallel
Strand 3	F	109	118	anti-parallel
Strand 4	G	85	86	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	171	174	first strand
Strand 2	F	313	317	parallel
Strand 3	F	263	267	anti-parallel
Strand 4	F	212	215	anti-parallel
Strand 5	F	246	250	parallel
Strand 6	e	6	7	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	179	180	first strand
Strand 2	F	183	184	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	274	276	first strand
Strand 2	F	305	307	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	171	174	first strand
Strand 2	G	313	317	parallel
Strand 3	G	263	267	anti-parallel
Strand 4	G	212	215	anti-parallel
Strand 5	G	246	250	parallel
Strand 6	b	6	7	parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	179	180	first strand
Strand 2	G	183	184	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	274	276	first strand
Strand 2	G	305	307	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	27	29	first strand
Strand 2	a	96	104	anti-parallel
Strand 3	a	70	72	anti-parallel
Strand 4	a	44	50	anti-parallel
Strand 5	a	57	61	anti-parallel
Strand 6	a	32	34	parallel

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There are 6 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	27	29	first strand
Strand 2	a	96	104	anti-parallel
Strand 3	a	151	155	anti-parallel
Strand 4	a	136	142	anti-parallel
Strand 5	a	117	120	anti-parallel
Strand 6	a	126	128	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	39	40	first strand
Strand 2	a	87	88	anti-parallel

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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	27	29	first strand
Strand 2	b	96	105	anti-parallel
Strand 3	b	70	72	anti-parallel
Strand 4	b	44	50	anti-parallel
Strand 5	b	57	61	anti-parallel
Strand 6	b	32	34	parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	27	29	first strand
Strand 2	b	96	105	anti-parallel
Strand 3	b	148	155	anti-parallel
Strand 4	b	132	145	anti-parallel
Strand 5	b	117	120	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	39	40	first strand
Strand 2	b	85	88	anti-parallel
Strand 3	b	80	82	anti-parallel

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There are 9 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	117	120	first strand
Strand 2	c	132	145	anti-parallel
Strand 3	c	148	155	anti-parallel
Strand 4	c	93	105	anti-parallel
Strand 5	c	70	72	anti-parallel
Strand 6	c	44	50	anti-parallel
Strand 7	c	57	61	anti-parallel
Strand 8	c	27	34	parallel
Strand 9	c	93	105	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	39	40	first strand
Strand 2	c	85	88	anti-parallel
Strand 3	c	80	82	anti-parallel

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There are 9 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	117	120	first strand
Strand 2	d	132	145	anti-parallel
Strand 3	d	148	155	anti-parallel
Strand 4	d	93	105	anti-parallel
Strand 5	d	70	72	anti-parallel
Strand 6	d	44	50	anti-parallel
Strand 7	d	57	61	anti-parallel
Strand 8	d	27	34	parallel
Strand 9	d	93	105	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	39	40	first strand
Strand 2	d	85	88	anti-parallel
Strand 3	d	80	82	anti-parallel

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There are 10 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	19	20	first strand
Strand 2	e	117	120	first strand
Strand 3	e	27	34	first strand
Strand 4	e	57	61	parallel
Strand 5	e	44	50	anti-parallel
Strand 6	e	70	72	anti-parallel
Strand 7	e	93	105	anti-parallel
Strand 8	e	149	155	anti-parallel
Strand 9	e	132	144	anti-parallel
Strand 10	e	117	120	anti-parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	39	40	first strand
Strand 2	e	85	88	anti-parallel
Strand 3	e	80	82	anti-parallel

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There are 9 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	117	120	first strand
Strand 2	f	132	144	anti-parallel
Strand 3	f	149	155	anti-parallel
Strand 4	f	93	105	anti-parallel
Strand 5	f	70	72	anti-parallel
Strand 6	f	44	50	anti-parallel
Strand 7	f	57	61	anti-parallel
Strand 8	f	27	34	parallel
Strand 9	f	93	105	anti-parallel

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There are 3 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	39	40	first strand
Strand 2	f	85	88	anti-parallel
Strand 3	f	80	82	anti-parallel

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There are 6 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	27	29	first strand
Strand 2	g	96	105	anti-parallel
Strand 3	g	70	72	anti-parallel
Strand 4	g	44	50	anti-parallel
Strand 5	g	57	61	anti-parallel
Strand 6	g	32	34	parallel

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There are 5 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	27	29	first strand
Strand 2	g	96	105	anti-parallel
Strand 3	g	148	155	anti-parallel
Strand 4	g	132	145	anti-parallel
Strand 5	g	117	120	anti-parallel

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There are 3 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	39	40	first strand
Strand 2	g	85	88	anti-parallel
Strand 3	g	80	82	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KMG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KMG