Analysis of interatomic Contacts of Structural Units in PDB entry:
9KMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KMK entry

There are 3 chains in PDB entry 9KMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLU 1SER 118
L
 GLU 1LYS 108
A
 GLY 57ARG 583
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9KMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
87 91Right-handed 310
Helix 2
AA2
L
80 84Right-handed 310
Helix 3
AA3
A
65 74Right-handed alpha
Helix 4
AA4
A
76 90Right-handed alpha
Helix 5
AA5
A
90 105Right-handed alpha
Helix 6
AA6
A
108 113Right-handed 310
Helix 7
AA7
A
117 120Right-handed 310
Helix 8
AA8
A
121 151Right-handed alpha
Helix 9
AA9
A
193 202Right-handed alpha
Helix 10
AB1
A
217 236Right-handed alpha
Helix 11
AB2
A
243 266Right-handed alpha
Helix 12
AB3
A
269 279Right-handed alpha
Helix 13
AB4
A
281 286Right-handed 310
Helix 14
AB5
A
287 312Right-handed alpha
Helix 15
AB6
A
321 355Right-handed alpha
Helix 16
AB7
A
372 379Right-handed alpha
Helix 17
AB8
A
383 418Right-handed alpha
Helix 18
AB9
A
428 444Right-handed alpha
Helix 19
AC1
A
450 462Right-handed alpha
Helix 20
AC2
A
465 482Right-handed alpha
Helix 21
AC3
A
484 496Right-handed alpha
Helix 22
AC4
A
501 510Right-handed alpha
Helix 23
AC5
A
510 526Right-handed alpha
Helix 24
AC6
A
539 555Right-handed alpha
Helix 25
AC7
A
555 568Right-handed alpha
Helix 26
AC8
A
571 581Right-handed alpha
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There are 6 sheets in PDB entry 9KMK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
19 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
106 117parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 6first strand
Strand 2
L
19 29anti-parallel
Strand 3
L
63 76anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 12first strand
Strand 2
L
104 106parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
54 55first strand
Strand 2
L
45 50anti-parallel
Strand 3
L
34 39anti-parallel
Strand 4
L
86 91anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
536 537anti-parallel
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