Analysis of interatomic Contacts of Structural Units in PDB entry:
9KMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KMP entry

There are 10 chains in PDB entry 9KMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1PRO 206
B
 VAL 4SER 117
C
 GLN 1PRO 206
D
 VAL 4SER 117
E
 GLN 1PRO 206
F
 VAL 4SER 117
G
 GLN 1PRO 206
I
 VAL 4SER 117
H
 GLN 1PRO 206
J
 VAL 4SER 117
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9KMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 46Right-handed 310
Helix 2
AA2
A
147 151Right-handed 310
Helix 3
AA3
A
169 177Right-handed alpha
Helix 4
AA4
B
87 91Right-handed 310
Helix 5
AA5
C
42 46Right-handed 310
Helix 6
AA6
C
147 151Right-handed 310
Helix 7
AA7
C
169 177Right-handed alpha
Helix 8
AA8
D
87 91Right-handed 310
Helix 9
AA9
E
42 46Right-handed 310
Helix 10
AB1
E
147 151Right-handed 310
Helix 11
AB2
E
169 177Right-handed alpha
Helix 12
AB3
F
87 91Right-handed 310
Helix 13
AB4
G
42 46Right-handed 310
Helix 14
AB5
G
147 151Right-handed 310
Helix 15
AB6
G
169 177Right-handed alpha
Helix 16
AB7
I
87 91Right-handed 310
Helix 17
AB8
H
42 46Right-handed 310
Helix 18
AB9
H
147 151Right-handed 310
Helix 19
AC1
H
169 177Right-handed alpha
Helix 20
AC2
J
87 91Right-handed 310
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There are 30 sheets in PDB entry 9KMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
106 111anti-parallel
Strand 3
A
94 101anti-parallel
Strand 4
A
32 40anti-parallel
Strand 5
A
154 162anti-parallel
Strand 6
A
7 11anti-parallel
Strand 7
A
199 202anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
19 22anti-parallel
Strand 3
A
192 195anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
64 68anti-parallel
Strand 3
A
72 76anti-parallel
Strand 4
A
81 83anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 9first strand
Strand 2
B
23 25anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 15first strand
Strand 2
B
115 116parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
47 52anti-parallel
Strand 3
B
34 40anti-parallel
Strand 4
B
92 99anti-parallel
Strand 5
B
111 113anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 120first strand
Strand 2
C
106 111anti-parallel
Strand 3
C
94 101anti-parallel
Strand 4
C
32 40anti-parallel
Strand 5
C
154 162anti-parallel
Strand 6
C
7 11anti-parallel
Strand 7
C
199 202anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 135first strand
Strand 2
C
19 22anti-parallel
Strand 3
C
192 195anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 53first strand
Strand 2
C
64 68anti-parallel
Strand 3
C
72 76anti-parallel
Strand 4
C
81 83anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
7 9first strand
Strand 2
D
23 25anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 15first strand
Strand 2
D
115 116parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 60first strand
Strand 2
D
47 52anti-parallel
Strand 3
D
34 40anti-parallel
Strand 4
D
92 99anti-parallel
Strand 5
D
111 113anti-parallel
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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
118 120first strand
Strand 2
E
106 111anti-parallel
Strand 3
E
94 101anti-parallel
Strand 4
E
32 40anti-parallel
Strand 5
E
154 162anti-parallel
Strand 6
E
7 11anti-parallel
Strand 7
E
199 202anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
133 135first strand
Strand 2
E
19 22anti-parallel
Strand 3
E
192 195anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
49 53first strand
Strand 2
E
64 68anti-parallel
Strand 3
E
72 76anti-parallel
Strand 4
E
81 83anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
7 9first strand
Strand 2
F
23 25anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
14 15first strand
Strand 2
F
115 116parallel
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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
58 60first strand
Strand 2
F
47 52anti-parallel
Strand 3
F
34 40anti-parallel
Strand 4
F
92 99anti-parallel
Strand 5
F
111 113anti-parallel
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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
118 120first strand
Strand 2
G
106 111anti-parallel
Strand 3
G
94 101anti-parallel
Strand 4
G
32 40anti-parallel
Strand 5
G
154 162anti-parallel
Strand 6
G
7 11anti-parallel
Strand 7
G
199 202anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
133 135first strand
Strand 2
G
19 22anti-parallel
Strand 3
G
192 195anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
49 53first strand
Strand 2
G
64 68anti-parallel
Strand 3
G
72 76anti-parallel
Strand 4
G
81 83anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
7 9first strand
Strand 2
I
23 25anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
14 15first strand
Strand 2
I
115 116parallel
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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
58 60first strand
Strand 2
I
47 52anti-parallel
Strand 3
I
34 40anti-parallel
Strand 4
I
92 99anti-parallel
Strand 5
I
111 113anti-parallel
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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
118 120first strand
Strand 2
H
106 111anti-parallel
Strand 3
H
94 101anti-parallel
Strand 4
H
32 40anti-parallel
Strand 5
H
154 162anti-parallel
Strand 6
H
7 11anti-parallel
Strand 7
H
199 202anti-parallel
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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
133 135first strand
Strand 2
H
19 22anti-parallel
Strand 3
H
192 195anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
49 53first strand
Strand 2
H
64 68anti-parallel
Strand 3
H
72 76anti-parallel
Strand 4
H
81 83anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
7 9first strand
Strand 2
J
23 25anti-parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
14 15first strand
Strand 2
J
115 116parallel
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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
58 60first strand
Strand 2
J
47 52anti-parallel
Strand 3
J
34 40anti-parallel
Strand 4
J
92 99anti-parallel
Strand 5
J
111 113anti-parallel
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