Analysis of interatomic Contacts of Structural Units in PDB entry:
9KMR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KMR entry

There are 3 chains in PDB entry 9KMR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 15ILE 695
B
 GLU 15ILE 695
C
 TYR 156LEU 581
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 9KMR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 36Right-handed alpha
Helix 2
AA2
A
42 66Right-handed alpha
Helix 3
AA3
A
67 71Right-handed 310
Helix 4
AA4
A
99 109Right-handed alpha
Helix 5
AA5
A
113 122Right-handed alpha
Helix 6
AA6
A
137 143Right-handed 310
Helix 7
AA7
A
192 198Right-handed 310
Helix 8
AA8
A
199 210Right-handed alpha
Helix 9
AA9
A
292 296Right-handed 310
Helix 10
AB1
A
304 314Right-handed alpha
Helix 11
AB2
A
371 375Right-handed 310
Helix 12
AB3
A
376 380Right-handed 310
Helix 13
AB4
A
403 425Right-handed alpha
Helix 14
AB5
A
428 449Right-handed alpha
Helix 15
AB6
A
452 458Right-handed alpha
Helix 16
AB7
A
474 481Right-handed alpha
Helix 17
AB8
A
495 501Right-handed alpha
Helix 18
AB9
A
504 512Right-handed alpha
Helix 19
AC1
A
522 528Right-handed alpha
Helix 20
AC2
A
551 575Right-handed alpha
Helix 21
AC3
A
604 614Right-handed alpha
Helix 22
AC4
A
618 625Right-handed alpha
Helix 23
AC5
A
637 650Right-handed alpha
Helix 24
AC6
A
653 671Right-handed alpha
Helix 25
AC7
A
677 694Right-handed alpha
Helix 26
AC8
B
25 36Right-handed alpha
Helix 27
AC9
B
42 66Right-handed alpha
Helix 28
AD1
B
67 71Right-handed 310
Helix 29
AD2
B
99 109Right-handed alpha
Helix 30
AD3
B
113 122Right-handed alpha
Helix 31
AD4
B
137 145Right-handed 310
Helix 32
AD5
B
191 198Right-handed 310
Helix 33
AD6
B
199 210Right-handed alpha
Helix 34
AD7
B
292 296Right-handed 310
Helix 35
AD8
B
304 314Right-handed alpha
Helix 36
AD9
B
371 375Right-handed 310
Helix 37
AE1
B
376 380Right-handed 310
Helix 38
AE2
B
403 425Right-handed alpha
Helix 39
AE3
B
427 449Right-handed alpha
Helix 40
AE4
B
452 458Right-handed alpha
Helix 41
AE5
B
474 481Right-handed alpha
Helix 42
AE6
B
495 501Right-handed alpha
Helix 43
AE7
B
504 512Right-handed alpha
Helix 44
AE8
B
522 528Right-handed alpha
Helix 45
AE9
B
551 575Right-handed alpha
Helix 46
AF1
B
604 614Right-handed alpha
Helix 47
AF2
B
618 625Right-handed alpha
Helix 48
AF3
B
637 650Right-handed alpha
Helix 49
AF4
B
653 671Right-handed alpha
Helix 50
AF5
B
677 694Right-handed alpha
Helix 51
AF6
C
229 240Right-handed alpha
Helix 52
AF7
C
257 262Right-handed alpha
Helix 53
AF8
C
325 332Right-handed alpha
Helix 54
AF9
C
335 355Right-handed alpha
Helix 55
AG1
C
433 447Right-handed alpha
Helix 56
AG2
C
451 456Right-handed alpha
Helix 57
AG3
C
479 490Right-handed alpha
Helix 58
AG4
C
499 512Right-handed alpha
Helix 59
AG5
C
519 523Right-handed 310
Helix 60
AG6
C
527 539Right-handed alpha
Helix 61
AG7
C
539 545Right-handed alpha
Helix 62
AG8
C
548 559Right-handed alpha
Helix 63
AG9
C
563 579Right-handed alpha
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There are 10 sheets in PDB entry 9KMR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
B
170 174anti-parallel
Strand 3
B
160 164anti-parallel
Strand 4
B
147 153anti-parallel
Strand 5
B
183 189anti-parallel
Strand 6
B
88 93anti-parallel
Strand 7
B
78 83anti-parallel
Strand 8
B
218 220parallel
Strand 9
B
285 286anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 286first strand
Strand 2
A
218 220anti-parallel
Strand 3
A
78 83parallel
Strand 4
A
88 93anti-parallel
Strand 5
A
183 190anti-parallel
Strand 6
A
145 153anti-parallel
Strand 7
A
160 164anti-parallel
Strand 8
A
170 174anti-parallel
Strand 9
B
17 20anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 329first strand
Strand 2
A
333 340anti-parallel
Strand 3
A
383 388anti-parallel
Strand 4
A
357 362parallel
Strand 5
A
366 369anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 473first strand
Strand 2
A
461 464anti-parallel
Strand 3
A
515 518anti-parallel
Strand 4
A
487 492parallel
Strand 5
A
536 540parallel
Strand 6
A
532 533anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 585first strand
Strand 2
A
629 633parallel
Strand 3
A
594 598anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 329first strand
Strand 2
B
333 340anti-parallel
Strand 3
B
383 388anti-parallel
Strand 4
B
357 362parallel
Strand 5
B
366 369anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
472 473first strand
Strand 2
B
461 464anti-parallel
Strand 3
B
515 518anti-parallel
Strand 4
B
487 492parallel
Strand 5
B
536 540parallel
Strand 6
B
532 533anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
583 585first strand
Strand 2
B
629 633parallel
Strand 3
B
594 598anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 164first strand
Strand 2
C
168 170anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
323 324first strand
Strand 2
C
369 371anti-parallel
Strand 3
C
379 381anti-parallel
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