Analysis of interatomic Contacts of Structural Units in PDB entry:
9KNJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KNJ entry

There are 3 chains in PDB entry 9KNJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5PHE 585
B
 SER 5PHE 585
C
 SER 5PRO 583
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 9KNJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 37Right-handed alpha
Helix 2
AA2
A
54 78Right-handed alpha
Helix 3
AA3
A
106 129Right-handed alpha
Helix 4
AA4
A
133 151Right-handed alpha
Helix 5
AA5
A
152 159Right-handed 310
Helix 6
AA6
A
160 168Right-handed alpha
Helix 7
AA7
A
173 194Right-handed alpha
Helix 8
AA8
A
249 254Right-handed 310
Helix 9
AA9
A
260 268Right-handed alpha
Helix 10
AB1
A
281 285Right-handed 310
Helix 11
AB2
A
288 295Right-handed alpha
Helix 12
AB3
A
296 309Right-handed alpha
Helix 13
AB4
A
319 335Right-handed alpha
Helix 14
AB5
A
356 363Right-handed 310
Helix 15
AB6
A
364 379Right-handed alpha
Helix 16
AB7
A
382 390Right-handed alpha
Helix 17
AB8
A
397 403Right-handed alpha
Helix 18
AB9
A
403 409Right-handed alpha
Helix 19
AC1
A
413 424Right-handed alpha
Helix 20
AC2
A
430 439Right-handed alpha
Helix 21
AC3
A
459 463Right-handed 310
Helix 22
AC4
A
479 488Right-handed alpha
Helix 23
AC5
A
510 514Right-handed 310
Helix 24
AC6
A
527 534Right-handed alpha
Helix 25
AC7
A
542 554Right-handed alpha
Helix 26
AC8
A
575 579Right-handed 310
Helix 27
AC9
B
6 34Right-handed alpha
Helix 28
AD1
B
54 77Right-handed alpha
Helix 29
AD2
B
104 129Right-handed alpha
Helix 30
AD3
B
133 151Right-handed alpha
Helix 31
AD4
B
152 156Right-handed 310
Helix 32
AD5
B
160 168Right-handed alpha
Helix 33
AD6
B
172 195Right-handed alpha
Helix 34
AD7
B
250 254Right-handed 310
Helix 35
AD8
B
260 268Right-handed alpha
Helix 36
AD9
B
281 285Right-handed 310
Helix 37
AE1
B
288 295Right-handed alpha
Helix 38
AE2
B
296 309Right-handed alpha
Helix 39
AE3
B
319 335Right-handed alpha
Helix 40
AE4
B
356 362Right-handed 310
Helix 41
AE5
B
364 379Right-handed alpha
Helix 42
AE6
B
382 388Right-handed alpha
Helix 43
AE7
B
397 403Right-handed alpha
Helix 44
AE8
B
403 409Right-handed alpha
Helix 45
AE9
B
413 423Right-handed alpha
Helix 46
AF1
B
430 439Right-handed alpha
Helix 47
AF2
B
459 463Right-handed 310
Helix 48
AF3
B
479 488Right-handed alpha
Helix 49
AF4
B
527 534Right-handed alpha
Helix 50
AF5
B
542 552Right-handed alpha
Helix 51
AF6
B
575 579Right-handed 310
Helix 52
AF7
C
6 35Right-handed alpha
Helix 53
AF8
C
54 76Right-handed alpha
Helix 54
AF9
C
105 129Right-handed alpha
Helix 55
AG1
C
133 151Right-handed alpha
Helix 56
AG2
C
152 159Right-handed 310
Helix 57
AG3
C
160 165Right-handed alpha
Helix 58
AG4
C
172 195Right-handed alpha
Helix 59
AG5
C
249 254Right-handed 310
Helix 60
AG6
C
260 268Right-handed alpha
Helix 61
AG7
C
281 285Right-handed 310
Helix 62
AG8
C
288 295Right-handed alpha
Helix 63
AG9
C
297 309Right-handed alpha
Helix 64
AH1
C
319 335Right-handed alpha
Helix 65
AH2
C
356 361Right-handed 310
Helix 66
AH3
C
364 379Right-handed alpha
Helix 67
AH4
C
382 390Right-handed alpha
Helix 68
AH5
C
397 402Right-handed alpha
Helix 69
AH6
C
403 409Right-handed alpha
Helix 70
AH7
C
413 424Right-handed alpha
Helix 71
AH8
C
430 440Right-handed alpha
Helix 72
AH9
C
459 463Right-handed 310
Helix 73
AI1
C
479 488Right-handed alpha
Helix 74
AI2
C
527 534Right-handed alpha
Helix 75
AI3
C
542 553Right-handed alpha
Helix 76
AI4
C
575 579Right-handed 310
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There are 10 sheets in PDB entry 9KNJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 539first strand
Strand 2
A
517 520anti-parallel
Strand 3
A
494 499anti-parallel
Strand 4
A
467 472parallel
Strand 5
A
341 347parallel
Strand 6
A
313 318parallel
Strand 7
A
240 243parallel
Strand 8
A
272 277parallel
Strand 9
A
223 228anti-parallel
Strand 10
A
214 219anti-parallel
Strand 11
A
570 571anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
560 561anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 381first strand
Strand 2
A
428 429anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 453first strand
Strand 2
A
456 457anti-parallel
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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
536 539first strand
Strand 2
B
517 520anti-parallel
Strand 3
B
494 499anti-parallel
Strand 4
B
467 472parallel
Strand 5
B
341 347parallel
Strand 6
B
313 318parallel
Strand 7
B
240 243parallel
Strand 8
B
272 277parallel
Strand 9
B
223 228anti-parallel
Strand 10
B
214 219anti-parallel
Strand 11
B
570 571anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 235first strand
Strand 2
B
560 561anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
380 381first strand
Strand 2
B
428 429anti-parallel
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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
536 537first strand
Strand 2
C
518 520anti-parallel
Strand 3
C
494 499anti-parallel
Strand 4
C
467 472parallel
Strand 5
C
341 347parallel
Strand 6
C
313 318parallel
Strand 7
C
240 243parallel
Strand 8
C
272 277parallel
Strand 9
C
223 228anti-parallel
Strand 10
C
214 219anti-parallel
Strand 11
C
570 571anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
234 236first strand
Strand 2
C
559 561anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
380 381first strand
Strand 2
C
428 429anti-parallel
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