Analysis of interatomic Contacts of Structural Units in PDB entry:
9KNK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KNK entry

There are 3 chains in PDB entry 9KNK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5PHE 585
B
 TYR 6PHE 585
C
 SER 5PRO 583
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 9KNK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 37Right-handed alpha
Helix 2
AA2
A
54 79Right-handed alpha
Helix 3
AA3
A
105 129Right-handed alpha
Helix 4
AA4
A
133 152Right-handed alpha
Helix 5
AA5
A
153 156Right-handed 310
Helix 6
AA6
A
160 168Right-handed alpha
Helix 7
AA7
A
173 197Right-handed alpha
Helix 8
AA8
A
249 254Right-handed 310
Helix 9
AA9
A
256 259Right-handed 310
Helix 10
AB1
A
260 268Right-handed alpha
Helix 11
AB2
A
288 295Right-handed alpha
Helix 12
AB3
A
296 309Right-handed alpha
Helix 13
AB4
A
320 335Right-handed alpha
Helix 14
AB5
A
356 363Right-handed 310
Helix 15
AB6
A
364 379Right-handed alpha
Helix 16
AB7
A
382 388Right-handed alpha
Helix 17
AB8
A
397 403Right-handed alpha
Helix 18
AB9
A
403 409Right-handed alpha
Helix 19
AC1
A
413 423Right-handed alpha
Helix 20
AC2
A
430 439Right-handed alpha
Helix 21
AC3
A
459 463Right-handed 310
Helix 22
AC4
A
479 488Right-handed alpha
Helix 23
AC5
A
527 534Right-handed alpha
Helix 24
AC6
A
542 554Right-handed alpha
Helix 25
AC7
B
7 37Right-handed alpha
Helix 26
AC8
B
55 78Right-handed alpha
Helix 27
AC9
B
106 129Right-handed alpha
Helix 28
AD1
B
133 151Right-handed alpha
Helix 29
AD2
B
152 156Right-handed 310
Helix 30
AD3
B
160 168Right-handed alpha
Helix 31
AD4
B
172 194Right-handed alpha
Helix 32
AD5
B
249 254Right-handed 310
Helix 33
AD6
B
260 268Right-handed alpha
Helix 34
AD7
B
281 285Right-handed 310
Helix 35
AD8
B
288 295Right-handed alpha
Helix 36
AD9
B
296 309Right-handed alpha
Helix 37
AE1
B
320 335Right-handed alpha
Helix 38
AE2
B
356 363Right-handed 310
Helix 39
AE3
B
364 379Right-handed alpha
Helix 40
AE4
B
382 388Right-handed alpha
Helix 41
AE5
B
397 403Right-handed alpha
Helix 42
AE6
B
403 409Right-handed alpha
Helix 43
AE7
B
413 423Right-handed alpha
Helix 44
AE8
B
430 439Right-handed alpha
Helix 45
AE9
B
459 463Right-handed 310
Helix 46
AF1
B
479 488Right-handed alpha
Helix 47
AF2
B
510 514Right-handed 310
Helix 48
AF3
B
527 534Right-handed alpha
Helix 49
AF4
B
542 553Right-handed alpha
Helix 50
AF5
C
6 35Right-handed alpha
Helix 51
AF6
C
54 79Right-handed alpha
Helix 52
AF7
C
105 129Right-handed alpha
Helix 53
AF8
C
133 152Right-handed alpha
Helix 54
AF9
C
153 159Right-handed 310
Helix 55
AG1
C
160 167Right-handed alpha
Helix 56
AG2
C
173 196Right-handed alpha
Helix 57
AG3
C
249 254Right-handed 310
Helix 58
AG4
C
256 259Right-handed 310
Helix 59
AG5
C
260 268Right-handed alpha
Helix 60
AG6
C
282 287Right-handed 310
Helix 61
AG7
C
288 295Right-handed alpha
Helix 62
AG8
C
296 309Right-handed alpha
Helix 63
AG9
C
320 335Right-handed alpha
Helix 64
AH1
C
364 379Right-handed alpha
Helix 65
AH2
C
382 388Right-handed alpha
Helix 66
AH3
C
398 403Right-handed alpha
Helix 67
AH4
C
403 409Right-handed alpha
Helix 68
AH5
C
413 423Right-handed alpha
Helix 69
AH6
C
430 439Right-handed alpha
Helix 70
AH7
C
459 463Right-handed 310
Helix 71
AH8
C
479 488Right-handed alpha
Helix 72
AH9
C
527 535Right-handed alpha
Helix 73
AI1
C
542 553Right-handed alpha
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There are 9 sheets in PDB entry 9KNK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 539first strand
Strand 2
A
517 520anti-parallel
Strand 3
A
494 499anti-parallel
Strand 4
A
467 472parallel
Strand 5
A
341 347parallel
Strand 6
A
313 317parallel
Strand 7
A
240 243parallel
Strand 8
A
272 277parallel
Strand 9
A
223 228anti-parallel
Strand 10
A
214 219anti-parallel
Strand 11
A
570 571anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
560 561anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 381first strand
Strand 2
A
428 429anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 219first strand
Strand 2
B
223 228anti-parallel
Strand 3
B
272 277anti-parallel
Strand 4
B
240 243parallel
Strand 5
B
313 317parallel
Strand 6
B
341 347parallel
Strand 7
B
467 472parallel
Strand 8
B
494 499parallel
Strand 9
B
517 520anti-parallel
Strand 10
B
536 539anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 235first strand
Strand 2
B
560 561anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
380 381first strand
Strand 2
B
428 429anti-parallel
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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
536 539first strand
Strand 2
C
517 520anti-parallel
Strand 3
C
494 499anti-parallel
Strand 4
C
467 472parallel
Strand 5
C
341 347parallel
Strand 6
C
313 317parallel
Strand 7
C
240 243parallel
Strand 8
C
272 277parallel
Strand 9
C
223 228anti-parallel
Strand 10
C
214 219anti-parallel
Strand 11
C
570 571anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
234 235first strand
Strand 2
C
560 561anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
380 381first strand
Strand 2
C
428 429anti-parallel
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