Analysis of interatomic Contacts of Structural Units in PDB entry:
9KO9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KO9 entry

There are 2 chains in PDB entry 9KO9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 1409
B
 G 13 U 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 9KO9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 82Right-handed alpha
Helix 2
AA2
A
86 98Right-handed alpha
Helix 3
AA3
A
113 117Right-handed 310
Helix 4
AA4
A
118 124Right-handed 310
Helix 5
AA5
A
134 148Right-handed alpha
Helix 6
AA6
A
150 164Right-handed alpha
Helix 7
AA7
A
166 174Right-handed alpha
Helix 8
AA8
A
180 185Right-handed alpha
Helix 9
AA9
A
186 188Right-handed 310
Helix 10
AB1
A
190 202Right-handed alpha
Helix 11
AB2
A
203 205Right-handed 310
Helix 12
AB3
A
207 218Right-handed alpha
Helix 13
AB4
A
223 225Right-handed 310
Helix 14
AB5
A
226 233Right-handed alpha
Helix 15
AB6
A
235 248Right-handed alpha
Helix 16
AB7
A
250 259Right-handed alpha
Helix 17
AB8
A
260 266Right-handed 310
Helix 18
AB9
A
269 280Right-handed alpha
Helix 19
AC1
A
293 303Right-handed alpha
Helix 20
AC2
A
307 314Right-handed alpha
Helix 21
AC3
A
340 349Right-handed alpha
Helix 22
AC4
A
350 361Right-handed alpha
Helix 23
AC5
A
362 366Right-handed 310
Helix 24
AC6
A
371 376Right-handed alpha
Helix 25
AC7
A
381 391Right-handed alpha
Helix 26
AC8
A
397 412Right-handed alpha
Helix 27
AC9
A
433 443Right-handed alpha
Helix 28
AD1
A
448 450Right-handed 310
Helix 29
AD2
A
451 472Right-handed alpha
Helix 30
AD3
A
473 478Right-handed 310
Helix 31
AD4
A
495 505Right-handed alpha
Helix 32
AD5
A
513 518Right-handed 310
Helix 33
AD6
A
525 541Right-handed alpha
Helix 34
AD7
A
543 557Right-handed alpha
Helix 35
AD8
A
562 587Right-handed alpha
Helix 36
AD9
A
592 597Right-handed alpha
Helix 37
AE1
A
598 610Right-handed alpha
Helix 38
AE2
A
620 630Right-handed alpha
Helix 39
AE3
A
652 676Right-handed alpha
Helix 40
AE4
A
693 704Right-handed alpha
Helix 41
AE5
A
708 728Right-handed alpha
Helix 42
AE6
A
782 790Right-handed alpha
Helix 43
AE7
A
795 799Right-handed 310
Helix 44
AE8
A
800 808Right-handed alpha
Helix 45
AE9
A
812 826Right-handed alpha
Helix 46
AF1
A
828 834Right-handed alpha
Helix 47
AF2
A
835 838Right-handed 310
Helix 48
AF3
A
839 849Right-handed alpha
Helix 49
AF4
A
850 852Right-handed 310
Helix 50
AF5
A
856 867Right-handed alpha
Helix 51
AF6
A
875 893Right-handed alpha
Helix 52
AF7
A
893 899Right-handed alpha
Helix 53
AF8
A
912 929Right-handed alpha
Helix 54
AF9
A
941 954Right-handed alpha
Helix 55
AG1
A
955 957Right-handed 310
Helix 56
AG2
A
972 984Right-handed alpha
Helix 57
AG3
A
1003 1007Right-handed 310
Helix 58
AG4
A
1045 1053Right-handed alpha
Helix 59
AG5
A
1074 1088Right-handed alpha
Helix 60
AG6
A
1091 1104Right-handed alpha
Helix 61
AG7
A
1126 1131Right-handed alpha
Helix 62
AG8
A
1132 1135Right-handed 310
Helix 63
AG9
A
1143 1147Right-handed 310
Helix 64
AH1
A
1156 1166Right-handed alpha
Helix 65
AH2
A
1167 1172Right-handed alpha
Helix 66
AH3
A
1177 1181Right-handed 310
Helix 67
AH4
A
1188 1198Right-handed alpha
Helix 68
AH5
A
1269 1272Right-handed 310
Helix 69
AH6
A
1325 1332Right-handed alpha
Helix 70
AH7
A
1338 1342Right-handed 310
Helix 71
AH8
A
1349 1361Right-handed alpha
Helix 72
AH9
A
1362 1366Right-handed 310
Helix 73
AI1
A
1368 1370Right-handed 310
Helix 74
AI2
A
1392 1409Right-handed alpha
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There are 9 sheets in PDB entry 9KO9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
904 910first strand
Strand 2
A
684 691parallel
Strand 3
A
3 11parallel
Strand 4
A
16 23anti-parallel
Strand 5
A
34 38anti-parallel
Strand 6
A
988 991parallel
Strand 7
A
1372 1378anti-parallel
Strand 8
A
1381 1387anti-parallel
Strand 9
A
1318 1324anti-parallel
Strand 10
A
1306 1310anti-parallel
Strand 11
A
1296 1297anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
904 910first strand
Strand 2
A
684 691parallel
Strand 3
A
3 11parallel
Strand 4
A
16 23anti-parallel
Strand 5
A
34 38anti-parallel
Strand 6
A
988 991parallel
Strand 7
A
1372 1378anti-parallel
Strand 8
A
1345 1347anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
482 484anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
754 757first strand
Strand 2
A
778 781anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1215 1218first strand
Strand 2
A
1105 1112anti-parallel
Strand 3
A
1010 1019anti-parallel
Strand 4
A
1237 1244anti-parallel
Strand 5
A
1225 1231anti-parallel
Strand 6
A
1276 1278anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1040 1043first strand
Strand 2
A
1029 1032anti-parallel
Strand 3
A
1022 1024anti-parallel
Strand 4
A
1069 1073anti-parallel
Strand 5
A
1057 1059anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1117 1118first strand
Strand 2
A
1123 1124anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1137 1142first strand
Strand 2
A
1149 1154anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1260 1267first strand
Strand 2
A
1249 1254anti-parallel
Strand 3
A
1289 1291anti-parallel
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