Analysis of interatomic Contacts of Structural Units in PDB entry:
9KOJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KOJ entry

There are 2 chains in PDB entry 9KOJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 278
B
 MET 1ILE 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9KOJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 16Right-handed alpha
Helix 2
AA2
A
20 31Right-handed alpha
Helix 3
AA3
A
46 58Right-handed alpha
Helix 4
AA4
A
74 96Right-handed alpha
Helix 5
AA5
A
106 110Right-handed 310
Helix 6
AA6
A
112 137Right-handed alpha
Helix 7
AA7
A
155 164Right-handed alpha
Helix 8
AA8
A
175 181Right-handed alpha
Helix 9
AA9
A
184 193Right-handed alpha
Helix 10
AB1
A
232 243Right-handed alpha
Helix 11
AB2
A
258 278Right-handed alpha
Helix 12
AB3
B
10 16Right-handed alpha
Helix 13
AB4
B
20 31Right-handed alpha
Helix 14
AB5
B
46 58Right-handed alpha
Helix 15
AB6
B
74 95Right-handed alpha
Helix 16
AB7
B
106 110Right-handed 310
Helix 17
AB8
B
112 137Right-handed alpha
Helix 18
AB9
B
155 164Right-handed alpha
Helix 19
AC1
B
175 181Right-handed alpha
Helix 20
AC2
B
184 193Right-handed alpha
Helix 21
AC3
B
232 243Right-handed alpha
Helix 22
AC4
B
258 278Right-handed alpha
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There are 4 sheets in PDB entry 9KOJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
35 39parallel
Strand 3
A
61 67parallel
Strand 4
A
99 103parallel
Strand 5
A
140 144parallel
Strand 6
A
170 174parallel
Strand 7
A
196 201parallel
Strand 8
A
248 251parallel
Strand 9
A
2 6parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 207first strand
Strand 2
A
220 224anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
35 39parallel
Strand 3
B
61 67parallel
Strand 4
B
99 103parallel
Strand 5
B
140 144parallel
Strand 6
B
170 174parallel
Strand 7
B
196 201parallel
Strand 8
B
248 251parallel
Strand 9
B
2 6parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 207first strand
Strand 2
B
220 224anti-parallel
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