Analysis of interatomic Contacts of Structural Units in PDB entry:
9KOK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KOK entry

There are 4 chains in PDB entry 9KOK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0VAL 300
A
 THR 302PHE 506
B
 SER 0VAL 300
B
 THR 302PHE 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 9KOK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 74Right-handed alpha
Helix 2
AA2
A
76 94Right-handed alpha
Helix 3
AA3
A
94 107Right-handed alpha
Helix 4
AA4
A
109 116Right-handed alpha
Helix 5
AA5
A
116 135Right-handed alpha
Helix 6
AA6
A
166 181Right-handed alpha
Helix 7
AA7
A
194 205Right-handed alpha
Helix 8
AA8
A
206 208Right-handed 310
Helix 9
AA9
A
222 229Right-handed alpha
Helix 10
AB1
A
241 256Right-handed alpha
Helix 11
AB2
A
273 278Right-handed 310
Helix 12
AB3
A
279 292Right-handed alpha
Helix 13
AB4
A
293 299Right-handed 310
Helix 14
AB5
A
313 327Right-handed alpha
Helix 15
AB6
A
345 362Right-handed alpha
Helix 16
AB7
A
376 382Right-handed 310
Helix 17
AB8
A
396 401Right-handed alpha
Helix 18
AB9
A
415 425Right-handed alpha
Helix 19
AC1
A
438 449Right-handed alpha
Helix 20
AC2
A
471 473Right-handed 310
Helix 21
AC3
A
481 487Right-handed 310
Helix 22
AC4
B
54 75Right-handed alpha
Helix 23
AC5
B
76 94Right-handed alpha
Helix 24
AC6
B
94 107Right-handed alpha
Helix 25
AC7
B
109 116Right-handed alpha
Helix 26
AC8
B
116 135Right-handed alpha
Helix 27
AC9
B
166 181Right-handed alpha
Helix 28
AD1
B
194 205Right-handed alpha
Helix 29
AD2
B
206 208Right-handed 310
Helix 30
AD3
B
222 229Right-handed alpha
Helix 31
AD4
B
241 256Right-handed alpha
Helix 32
AD5
B
273 278Right-handed 310
Helix 33
AD6
B
279 292Right-handed alpha
Helix 34
AD7
B
293 299Right-handed 310
Helix 35
AD8
B
313 326Right-handed alpha
Helix 36
AD9
B
345 362Right-handed alpha
Helix 37
AE1
B
376 382Right-handed 310
Helix 38
AE2
B
396 401Right-handed alpha
Helix 39
AE3
B
415 425Right-handed alpha
Helix 40
AE4
B
438 449Right-handed alpha
Helix 41
AE5
B
471 473Right-handed 310
Helix 42
AE6
B
481 487Right-handed 310
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There are 8 sheets in PDB entry 9KOK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
26 28anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
46 51anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 143first strand
Strand 2
A
146 154anti-parallel
Strand 3
A
489 497anti-parallel
Strand 4
B
453 456parallel
Strand 5
B
431 435parallel
Strand 6
B
268 271parallel
Strand 7
B
306 310parallel
Strand 8
B
407 413parallel
Strand 9
B
388 391parallel
Strand 10
B
365 368anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 215first strand
Strand 2
A
184 188parallel
Strand 3
A
157 161parallel
Strand 4
A
236 239parallel
Strand 5
A
259 262parallel
Strand 6
A
475 476anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 368first strand
Strand 2
A
388 391anti-parallel
Strand 3
A
407 413parallel
Strand 4
A
306 310parallel
Strand 5
A
268 271parallel
Strand 6
A
431 435parallel
Strand 7
A
453 456parallel
Strand 8
B
489 497parallel
Strand 9
B
146 154anti-parallel
Strand 10
B
138 143anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 23first strand
Strand 2
B
26 28anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 39first strand
Strand 2
B
46 51anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 215first strand
Strand 2
B
184 188parallel
Strand 3
B
157 161parallel
Strand 4
B
236 239parallel
Strand 5
B
259 262parallel
Strand 6
B
475 476anti-parallel
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