Analysis of interatomic Contacts of Structural Units in PDB entry:
9KOP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KOP entry

There is 1 chain in PDB entry 9KOP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 25PRO 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 9KOP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 37Right-handed alpha
Helix 2
AA2
A
50 67Right-handed alpha
Helix 3
AA3
A
67 81Right-handed alpha
Helix 4
AA4
A
85 97Right-handed alpha
Helix 5
AA5
A
99 104Right-handed alpha
Helix 6
AA6
A
104 116Right-handed alpha
Helix 7
AA7
A
120 133Right-handed alpha
Helix 8
AA8
A
137 151Right-handed alpha
Helix 9
AA9
A
152 159Right-handed alpha
Helix 10
AB1
A
167 176Right-handed alpha
Helix 11
AB2
A
181 194Right-handed alpha
Helix 12
AB3
A
195 197Right-handed 310
Helix 13
AB4
A
198 209Right-handed alpha
Helix 14
AB5
A
214 223Right-handed alpha
Helix 15
AB6
A
225 233Right-handed alpha
Helix 16
AB7
A
234 236Right-handed 310
Helix 17
AB8
A
237 251Right-handed alpha
Helix 18
AB9
A
252 255Right-handed 310
Helix 19
AC1
A
256 268Right-handed alpha
Helix 20
AC2
A
269 273Right-handed 310
Helix 21
AC3
A
276 291Right-handed alpha
Helix 22
AC4
A
293 306Right-handed alpha
Helix 23
AC5
A
324 329Right-handed 310
Helix 24
AC6
A
338 355Right-handed alpha
Helix 25
AC7
A
369 372Right-handed 310
Helix 26
AC8
A
375 386Right-handed alpha
Helix 27
AC9
A
392 401Right-handed alpha
Helix 28
AD1
A
424 433Right-handed alpha
Helix 29
AD2
A
466 476Right-handed alpha
Helix 30
AD3
A
476 490Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 9KOP.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 367first strand
Strand 2
A
356 361anti-parallel
Strand 3
A
317 322parallel
Strand 4
A
410 415parallel
Strand 5
A
438 443parallel
Strand 6
A
457 460parallel
Strand 7
A
451 454anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il