Analysis of interatomic Contacts of Structural Units in PDB entry:
9KOR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KOR entry

There are 4 chains in PDB entry 9KOR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3LYS 1410
B
 G 1 U 121
C
 T 1 G 4
D
 C 1 C 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 9KOR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 82Right-handed alpha
Helix 2
AA2
A
86 98Right-handed alpha
Helix 3
AA3
A
110 117Right-handed 310
Helix 4
AA4
A
118 125Right-handed 310
Helix 5
AA5
A
134 148Right-handed alpha
Helix 6
AA6
A
150 164Right-handed alpha
Helix 7
AA7
A
167 177Right-handed alpha
Helix 8
AA8
A
180 203Right-handed alpha
Helix 9
AA9
A
208 223Right-handed alpha
Helix 10
AB1
A
226 233Right-handed alpha
Helix 11
AB2
A
235 248Right-handed alpha
Helix 12
AB3
A
250 256Right-handed alpha
Helix 13
AB4
A
260 266Right-handed 310
Helix 14
AB5
A
269 280Right-handed alpha
Helix 15
AB6
A
287 291Right-handed 310
Helix 16
AB7
A
293 303Right-handed alpha
Helix 17
AB8
A
307 314Right-handed alpha
Helix 18
AB9
A
315 320Right-handed 310
Helix 19
AC1
A
340 349Right-handed alpha
Helix 20
AC2
A
350 362Right-handed alpha
Helix 21
AC3
A
363 366Right-handed 310
Helix 22
AC4
A
371 376Right-handed alpha
Helix 23
AC5
A
381 391Right-handed alpha
Helix 24
AC6
A
397 412Right-handed alpha
Helix 25
AC7
A
433 443Right-handed alpha
Helix 26
AC8
A
451 471Right-handed alpha
Helix 27
AC9
A
473 478Right-handed 310
Helix 28
AD1
A
493 501Right-handed alpha
Helix 29
AD2
A
513 518Right-handed alpha
Helix 30
AD3
A
521 525Right-handed 310
Helix 31
AD4
A
526 541Right-handed alpha
Helix 32
AD5
A
543 558Right-handed alpha
Helix 33
AD6
A
564 587Right-handed alpha
Helix 34
AD7
A
589 595Right-handed alpha
Helix 35
AD8
A
598 611Right-handed alpha
Helix 36
AD9
A
620 632Right-handed alpha
Helix 37
AE1
A
652 675Right-handed alpha
Helix 38
AE2
A
876 901Right-handed alpha
Helix 39
AE3
A
914 919Right-handed alpha
Helix 40
AE4
A
919 929Right-handed alpha
Helix 41
AE5
A
940 954Right-handed alpha
Helix 42
AE6
A
972 979Right-handed alpha
Helix 43
AE7
A
1003 1007Right-handed 310
Helix 44
AE8
A
1045 1054Right-handed alpha
Helix 45
AE9
A
1074 1088Right-handed alpha
Helix 46
AF1
A
1091 1104Right-handed alpha
Helix 47
AF2
A
1126 1131Right-handed alpha
Helix 48
AF3
A
1132 1135Right-handed 310
Helix 49
AF4
A
1143 1147Right-handed 310
Helix 50
AF5
A
1156 1166Right-handed alpha
Helix 51
AF6
A
1188 1198Right-handed alpha
Helix 52
AF7
A
1269 1272Right-handed 310
Helix 53
AF8
A
1325 1332Right-handed alpha
Helix 54
AF9
A
1338 1342Right-handed 310
Helix 55
AG1
A
1349 1361Right-handed alpha
Helix 56
AG2
A
1368 1370Right-handed 310
Helix 57
AG3
A
1392 1410Right-handed alpha
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There are 8 sheets in PDB entry 9KOR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
904 910first strand
Strand 2
A
684 690parallel
Strand 3
A
7 9parallel
Strand 4
A
16 20anti-parallel
Strand 5
A
34 38anti-parallel
Strand 6
A
988 991parallel
Strand 7
A
1372 1378anti-parallel
Strand 8
A
1381 1387anti-parallel
Strand 9
A
1318 1324anti-parallel
Strand 10
A
1306 1310anti-parallel
Strand 11
A
1296 1297anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
904 910first strand
Strand 2
A
684 690parallel
Strand 3
A
7 9parallel
Strand 4
A
16 20anti-parallel
Strand 5
A
34 38anti-parallel
Strand 6
A
988 991parallel
Strand 7
A
1372 1378anti-parallel
Strand 8
A
1345 1347anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
482 484anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1215 1218first strand
Strand 2
A
1105 1112anti-parallel
Strand 3
A
1010 1019anti-parallel
Strand 4
A
1237 1244anti-parallel
Strand 5
A
1225 1231anti-parallel
Strand 6
A
1276 1278anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1040 1043first strand
Strand 2
A
1029 1032anti-parallel
Strand 3
A
1022 1024anti-parallel
Strand 4
A
1069 1073anti-parallel
Strand 5
A
1057 1059anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1117 1118first strand
Strand 2
A
1123 1124anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1137 1141first strand
Strand 2
A
1150 1154anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1266 1267first strand
Strand 2
A
1249 1253anti-parallel
Strand 3
A
1289 1291anti-parallel
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