Analysis of interatomic Contacts of Structural Units in PDB entry:
9KOV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KOV entry

There are 8 chains in PDB entry 9KOV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 17	GLU 422
B	ALA 17	GLU 422
C	ALA 17	GLU 422
D	ALA 17	GLU 422
E	ALA 17	GLU 422
F	ALA 17	GLU 422
G	ALA 17	GLU 422
H	ALA 17	GLU 422

There are118 helices in PDB entry 9KOV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	89	97	Right-handed alpha
Helix 2	AA2	A	98	116	Right-handed alpha
Helix 3	AA3	A	128	139	Right-handed alpha
Helix 4	AA4	A	168	173	Right-handed alpha
Helix 5	AA5	A	176	180	Right-handed 310
Helix 6	AA6	A	184	199	Right-handed alpha
Helix 7	AA7	A	224	238	Right-handed alpha
Helix 8	AA8	A	248	259	Right-handed alpha
Helix 9	AA9	A	270	281	Right-handed alpha
Helix 10	AB1	A	287	294	Right-handed alpha
Helix 11	AB2	A	318	330	Right-handed alpha
Helix 12	AB3	A	348	357	Right-handed alpha
Helix 13	AB4	A	360	369	Right-handed alpha
Helix 14	AB5	A	369	377	Right-handed alpha
Helix 15	AB6	A	402	407	Right-handed 310
Helix 16	AB7	B	89	97	Right-handed alpha
Helix 17	AB8	B	98	116	Right-handed alpha
Helix 18	AB9	B	128	139	Right-handed alpha
Helix 19	AC1	B	168	173	Right-handed alpha
Helix 20	AC2	B	176	180	Right-handed 310
Helix 21	AC3	B	184	199	Right-handed alpha
Helix 22	AC4	B	224	238	Right-handed alpha
Helix 23	AC5	B	248	259	Right-handed alpha
Helix 24	AC6	B	270	281	Right-handed alpha
Helix 25	AC7	B	317	330	Right-handed alpha
Helix 26	AC8	B	348	357	Right-handed alpha
Helix 27	AC9	B	360	369	Right-handed alpha
Helix 28	AD1	B	369	377	Right-handed alpha
Helix 29	AD2	B	402	408	Right-handed 310
Helix 30	AD3	C	89	97	Right-handed alpha
Helix 31	AD4	C	98	116	Right-handed alpha
Helix 32	AD5	C	128	139	Right-handed alpha
Helix 33	AD6	C	168	173	Right-handed alpha
Helix 34	AD7	C	176	180	Right-handed 310
Helix 35	AD8	C	184	199	Right-handed alpha
Helix 36	AD9	C	224	238	Right-handed alpha
Helix 37	AE1	C	248	259	Right-handed alpha
Helix 38	AE2	C	270	281	Right-handed alpha
Helix 39	AE3	C	287	292	Right-handed alpha
Helix 40	AE4	C	319	330	Right-handed alpha
Helix 41	AE5	C	347	357	Right-handed alpha
Helix 42	AE6	C	360	369	Right-handed alpha
Helix 43	AE7	C	369	377	Right-handed alpha
Helix 44	AE8	C	402	407	Right-handed 310
Helix 45	AE9	D	91	95	Right-handed 310
Helix 46	AF1	D	98	116	Right-handed alpha
Helix 47	AF2	D	128	139	Right-handed alpha
Helix 48	AF3	D	168	173	Right-handed alpha
Helix 49	AF4	D	176	180	Right-handed 310
Helix 50	AF5	D	184	198	Right-handed alpha
Helix 51	AF6	D	224	238	Right-handed alpha
Helix 52	AF7	D	248	259	Right-handed alpha
Helix 53	AF8	D	270	281	Right-handed alpha
Helix 54	AF9	D	287	292	Right-handed alpha
Helix 55	AG1	D	319	330	Right-handed alpha
Helix 56	AG2	D	348	357	Right-handed alpha
Helix 57	AG3	D	360	369	Right-handed alpha
Helix 58	AG4	D	369	377	Right-handed alpha
Helix 59	AG5	D	402	407	Right-handed 310
Helix 60	AG6	E	89	97	Right-handed alpha
Helix 61	AG7	E	98	116	Right-handed alpha
Helix 62	AG8	E	128	139	Right-handed alpha
Helix 63	AG9	E	168	173	Right-handed alpha
Helix 64	AH1	E	176	180	Right-handed 310
Helix 65	AH2	E	184	199	Right-handed alpha
Helix 66	AH3	E	224	238	Right-handed alpha
Helix 67	AH4	E	248	259	Right-handed alpha
Helix 68	AH5	E	270	281	Right-handed alpha
Helix 69	AH6	E	287	293	Right-handed alpha
Helix 70	AH7	E	320	330	Right-handed alpha
Helix 71	AH8	E	348	357	Right-handed alpha
Helix 72	AH9	E	360	369	Right-handed alpha
Helix 73	AI1	E	369	377	Right-handed alpha
Helix 74	AI2	E	402	407	Right-handed 310
Helix 75	AI3	F	89	97	Right-handed alpha
Helix 76	AI4	F	98	116	Right-handed alpha
Helix 77	AI5	F	128	139	Right-handed alpha
Helix 78	AI6	F	168	173	Right-handed alpha
Helix 79	AI7	F	176	180	Right-handed 310
Helix 80	AI8	F	184	198	Right-handed alpha
Helix 81	AI9	F	224	238	Right-handed alpha
Helix 82	AJ1	F	248	259	Right-handed alpha
Helix 83	AJ2	F	270	281	Right-handed alpha
Helix 84	AJ3	F	287	292	Right-handed alpha
Helix 85	AJ4	F	317	330	Right-handed alpha
Helix 86	AJ5	F	348	357	Right-handed alpha
Helix 87	AJ6	F	360	369	Right-handed alpha
Helix 88	AJ7	F	369	377	Right-handed alpha
Helix 89	AJ8	F	402	407	Right-handed 310
Helix 90	AJ9	G	89	97	Right-handed alpha
Helix 91	AK1	G	98	116	Right-handed alpha
Helix 92	AK2	G	128	139	Right-handed alpha
Helix 93	AK3	G	168	173	Right-handed alpha
Helix 94	AK4	G	176	180	Right-handed 310
Helix 95	AK5	G	184	199	Right-handed alpha
Helix 96	AK6	G	224	238	Right-handed alpha
Helix 97	AK7	G	248	259	Right-handed alpha
Helix 98	AK8	G	270	281	Right-handed alpha
Helix 99	AK9	G	287	297	Right-handed alpha
Helix 100	AL1	G	318	330	Right-handed alpha
Helix 101	AL2	G	348	357	Right-handed alpha
Helix 102	AL3	G	360	369	Right-handed alpha
Helix 103	AL4	G	369	377	Right-handed alpha
Helix 104	AL5	G	402	407	Right-handed 310
Helix 105	AL6	H	89	97	Right-handed alpha
Helix 106	AL7	H	98	116	Right-handed alpha
Helix 107	AL8	H	128	139	Right-handed alpha
Helix 108	AL9	H	168	173	Right-handed alpha
Helix 109	AM1	H	176	180	Right-handed 310
Helix 110	AM2	H	184	198	Right-handed alpha
Helix 111	AM3	H	224	238	Right-handed alpha
Helix 112	AM4	H	248	259	Right-handed alpha
Helix 113	AM5	H	270	281	Right-handed alpha
Helix 114	AM6	H	319	330	Right-handed alpha
Helix 115	AM7	H	348	357	Right-handed alpha
Helix 116	AM8	H	360	369	Right-handed alpha
Helix 117	AM9	H	369	377	Right-handed alpha
Helix 118	AN1	H	402	407	Right-handed 310

There are 24 sheets in PDB entry 9KOV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	52	first strand
Strand 2	A	33	43	anti-parallel
Strand 3	A	18	28	anti-parallel
Strand 4	A	62	73	parallel
Strand 5	A	392	395	anti-parallel
Strand 6	A	409	414	anti-parallel
Strand 7	A	417	421	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	80	first strand
Strand 2	A	118	123	parallel
Strand 3	A	146	149	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	206	first strand
Strand 2	A	242	246	parallel
Strand 3	A	262	265	parallel
Strand 4	A	283	285	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	52	first strand
Strand 2	B	33	43	anti-parallel
Strand 3	B	18	28	anti-parallel
Strand 4	B	62	73	parallel
Strand 5	B	392	395	anti-parallel
Strand 6	B	411	414	anti-parallel
Strand 7	B	417	421	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	80	first strand
Strand 2	B	118	123	parallel
Strand 3	B	146	149	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	206	first strand
Strand 2	B	242	246	parallel
Strand 3	B	262	265	parallel
Strand 4	B	283	285	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	52	first strand
Strand 2	C	33	43	anti-parallel
Strand 3	C	18	28	anti-parallel
Strand 4	C	61	73	parallel
Strand 5	C	392	395	anti-parallel
Strand 6	C	409	414	anti-parallel
Strand 7	C	417	421	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	80	first strand
Strand 2	C	118	123	parallel
Strand 3	C	146	149	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	206	first strand
Strand 2	C	242	245	parallel
Strand 3	C	262	264	parallel
Strand 4	C	283	285	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	52	first strand
Strand 2	D	33	43	anti-parallel
Strand 3	D	18	28	anti-parallel
Strand 4	D	62	73	parallel
Strand 5	D	392	395	anti-parallel
Strand 6	D	409	414	anti-parallel
Strand 7	D	417	421	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	80	first strand
Strand 2	D	118	123	parallel
Strand 3	D	146	149	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	206	first strand
Strand 2	D	242	246	parallel
Strand 3	D	262	265	parallel
Strand 4	D	283	285	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	52	first strand
Strand 2	E	33	43	anti-parallel
Strand 3	E	18	28	anti-parallel
Strand 4	E	62	73	parallel
Strand 5	E	392	395	anti-parallel
Strand 6	E	409	414	anti-parallel
Strand 7	E	417	421	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	80	first strand
Strand 2	E	118	123	parallel
Strand 3	E	146	149	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	203	206	first strand
Strand 2	E	242	246	parallel
Strand 3	E	262	265	parallel
Strand 4	E	283	285	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	52	first strand
Strand 2	F	33	43	anti-parallel
Strand 3	F	18	28	anti-parallel
Strand 4	F	62	73	parallel
Strand 5	F	392	395	anti-parallel
Strand 6	F	409	414	anti-parallel
Strand 7	F	417	421	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	80	first strand
Strand 2	F	118	123	parallel
Strand 3	F	146	149	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	203	206	first strand
Strand 2	F	242	246	parallel
Strand 3	F	262	265	parallel
Strand 4	F	283	285	parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	52	first strand
Strand 2	G	33	43	anti-parallel
Strand 3	G	18	28	anti-parallel
Strand 4	G	61	73	parallel
Strand 5	G	392	395	anti-parallel
Strand 6	G	409	414	anti-parallel
Strand 7	G	417	421	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	80	first strand
Strand 2	G	118	123	parallel
Strand 3	G	146	149	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	203	206	first strand
Strand 2	G	242	246	parallel
Strand 3	G	262	265	parallel
Strand 4	G	283	285	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	52	first strand
Strand 2	H	33	43	anti-parallel
Strand 3	H	18	28	anti-parallel
Strand 4	H	61	73	parallel
Strand 5	H	392	395	anti-parallel
Strand 6	H	409	414	anti-parallel
Strand 7	H	417	421	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	75	80	first strand
Strand 2	H	118	123	parallel
Strand 3	H	146	149	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	203	206	first strand
Strand 2	H	242	246	parallel
Strand 3	H	262	265	parallel
Strand 4	H	283	285	parallel
Strand 5	H	332	333	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KOV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KOV