Analysis of interatomic Contacts of Structural Units in PDB entry:
9KP0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KP0 entry

There are 2 chains in PDB entry 9KP0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 27GLN 439
B
 LEU 27GLN 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9KP0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 70Right-handed alpha
Helix 2
AA2
A
78 82Right-handed 310
Helix 3
AA3
A
115 119Right-handed 310
Helix 4
AA4
A
125 137Right-handed alpha
Helix 5
AA5
A
149 160Right-handed alpha
Helix 6
AA6
A
230 243Right-handed alpha
Helix 7
AA7
A
251 256Right-handed alpha
Helix 8
AA8
A
289 299Right-handed alpha
Helix 9
AA9
A
312 323Right-handed alpha
Helix 10
AB1
A
324 327Right-handed 310
Helix 11
AB2
A
336 348Right-handed alpha
Helix 12
AB3
A
352 363Right-handed alpha
Helix 13
AB4
A
417 437Right-handed alpha
Helix 14
AB5
B
57 70Right-handed alpha
Helix 15
AB6
B
78 82Right-handed 310
Helix 16
AB7
B
125 137Right-handed alpha
Helix 17
AB8
B
149 160Right-handed alpha
Helix 18
AB9
B
230 243Right-handed alpha
Helix 19
AC1
B
251 256Right-handed alpha
Helix 20
AC2
B
289 299Right-handed alpha
Helix 21
AC3
B
312 323Right-handed alpha
Helix 22
AC4
B
324 327Right-handed 310
Helix 23
AC5
B
336 348Right-handed alpha
Helix 24
AC6
B
352 363Right-handed alpha
Helix 25
AC7
B
417 437Right-handed alpha
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There are 5 sheets in PDB entry 9KP0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 172first strand
Strand 2
A
175 183anti-parallel
Strand 3
A
186 192anti-parallel
Strand 4
A
139 147parallel
Strand 5
A
45 54anti-parallel
Strand 6
A
96 103parallel
Strand 7
A
86 93anti-parallel
Strand 8
A
73 77anti-parallel
Strand 9
A
206 207anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 250first strand
Strand 2
A
262 268anti-parallel
Strand 3
A
275 281anti-parallel
Strand 4
A
218 227parallel
Strand 5
A
302 310anti-parallel
Strand 6
A
389 397parallel
Strand 7
A
372 378anti-parallel
Strand 8
A
365 368anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 400first strand
Strand 2
A
408 409anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 172first strand
Strand 2
B
175 183anti-parallel
Strand 3
B
186 192anti-parallel
Strand 4
B
139 147parallel
Strand 5
B
45 54anti-parallel
Strand 6
B
96 103parallel
Strand 7
B
86 93anti-parallel
Strand 8
B
73 77anti-parallel
Strand 9
B
206 207anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 250first strand
Strand 2
B
262 268anti-parallel
Strand 3
B
275 281anti-parallel
Strand 4
B
218 227parallel
Strand 5
B
302 310anti-parallel
Strand 6
B
389 397parallel
Strand 7
B
372 378anti-parallel
Strand 8
B
365 368anti-parallel
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