Analysis of interatomic Contacts of Structural Units in PDB entry:
9KP3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KP3 entry

There are 2 chains in PDB entry 9KP3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 53ALA 340
B
 SER 53ALA 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9KP3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 98Right-handed alpha
Helix 2
AA2
A
100 119Right-handed alpha
Helix 3
AA3
A
144 148Right-handed 310
Helix 4
AA4
A
173 178Right-handed alpha
Helix 5
AA5
A
190 200Right-handed alpha
Helix 6
AA6
A
243 255Right-handed alpha
Helix 7
AA7
A
278 282Right-handed 310
Helix 8
AA8
A
285 289Right-handed 310
Helix 9
AA9
A
295 303Right-handed alpha
Helix 10
AB1
B
54 95Right-handed alpha
Helix 11
AB2
B
100 119Right-handed alpha
Helix 12
AB3
B
137 142Right-handed 310
Helix 13
AB4
B
144 148Right-handed 310
Helix 14
AB5
B
173 178Right-handed alpha
Helix 15
AB6
B
190 200Right-handed alpha
Helix 16
AB7
B
242 256Right-handed alpha
Helix 17
AB8
B
257 260Right-handed 310
Helix 18
AB9
B
278 282Right-handed 310
Helix 19
AC1
B
290 294Right-handed 310
Helix 20
AC2
B
295 304Right-handed alpha
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There are 6 sheets in PDB entry 9KP3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 171first strand
Strand 2
A
156 161anti-parallel
Strand 3
A
124 129anti-parallel
Strand 4
A
231 241anti-parallel
Strand 5
A
216 228anti-parallel
Strand 6
A
203 204anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 171first strand
Strand 2
A
156 161anti-parallel
Strand 3
A
124 129anti-parallel
Strand 4
A
231 241anti-parallel
Strand 5
A
216 228anti-parallel
Strand 6
A
208 211anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 275first strand
Strand 2
A
262 266anti-parallel
Strand 3
A
330 335anti-parallel
Strand 4
A
314 321anti-parallel
Strand 5
A
307 311anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 170first strand
Strand 2
B
156 160anti-parallel
Strand 3
B
124 129anti-parallel
Strand 4
B
231 241anti-parallel
Strand 5
B
215 228anti-parallel
Strand 6
B
203 204anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 170first strand
Strand 2
B
156 160anti-parallel
Strand 3
B
124 129anti-parallel
Strand 4
B
231 241anti-parallel
Strand 5
B
215 228anti-parallel
Strand 6
B
208 212anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 275first strand
Strand 2
B
262 266anti-parallel
Strand 3
B
330 336anti-parallel
Strand 4
B
315 321anti-parallel
Strand 5
B
307 309anti-parallel
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