Analysis of interatomic Contacts of Structural Units in PDB entry:
9KP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KP8 entry

There is 1 chain in PDB entry 9KP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1SER 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9KP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
66 76Right-handed alpha
Helix 3
AA3
A
109 122Right-handed alpha
Helix 4
AA4
A
124 128Right-handed 310
Helix 5
AA5
A
139 144Right-handed alpha
Helix 6
AA6
A
145 153Right-handed alpha
Helix 7
AA7
A
155 157Right-handed 310
Helix 8
AA8
A
158 165Right-handed alpha
Helix 9
AA9
A
169 173Right-handed 310
Helix 10
AB1
A
174 183Right-handed alpha
Helix 11
AB2
A
183 193Right-handed alpha
Helix 12
AB3
A
200 213Right-handed alpha
Helix 13
AB4
A
258 263Right-handed 310
Helix 14
AB5
A
268 276Right-handed alpha
Helix 15
AB6
A
306 310Right-handed 310
Helix 16
AB7
A
339 357Right-handed alpha
Helix 17
AB8
A
381 387Right-handed alpha
Helix 18
AB9
A
388 396Right-handed alpha
Helix 19
AC1
A
397 400Right-handed 310
Helix 20
AC2
A
413 429Right-handed alpha
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There are 7 sheets in PDB entry 9KP8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
32 35parallel
Strand 3
A
5 12parallel
Strand 4
A
243 253parallel
Strand 5
A
231 238anti-parallel
Strand 6
A
220 228anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
32 35parallel
Strand 3
A
5 12parallel
Strand 4
A
243 253parallel
Strand 5
A
402 404parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
55 57anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
195 197anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 93first strand
Strand 2
A
297 301parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 320first strand
Strand 2
A
328 334anti-parallel
Strand 3
A
279 289anti-parallel
Strand 4
A
366 372anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 320first strand
Strand 2
A
328 334anti-parallel
Strand 3
A
279 289anti-parallel
Strand 4
A
376 379anti-parallel
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